RNA id: TU58160


Basic Information

Item Value
RNA id TU58160
length 278
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G46652
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41845308 ~ 41893174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCTGCTGTTCACTTCACCAGTGGGCTGTCAGACGTACACGCCCAGAAGGGTCATGCTGCAGAGCTCGTCTGTAAGCTGAATAGTGACCAGTCCAAAGGAGTTTGGTTTAAAGATGGGCAGAAGCTGTCTTCAAGAGATGGACTGACCATTTCTAAAGAAGGGGCCTGCCATAAGCTGACAATTGCCAAAGCTGATAAATCTAGTTCAGGGAAGTACCGGTTTGAAGCAGAAGGACACAAAACAGAAGCCCATGTAATTGTGGAAGaacaggacag

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 431708 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 641159 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 959679 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 1419801 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1432636 40391888 ~ 40412672 (+) True G46355
TU58217 lncRNA downstream 602572 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 757016 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 799032 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 800488 42693662 ~ 42695623 (+) True G46734
TU58277 lncRNA downstream 810482 42703656 ~ 42792219 (+) True G46739
AMCG00013761 mRNA upstream 57914 41764744 ~ 41787394 (+) True AMCG00013761
AMCG00013759 mRNA upstream 208083 41621764 ~ 41637225 (+) True AMCG00013759
AMCG00013755 mRNA upstream 240365 41594817 ~ 41604943 (+) True AMCG00013755
AMCG00013756 mRNA upstream 257369 41573978 ~ 41587939 (+) True AMCG00013756
AMCG00013760 mRNA upstream 292738 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013770 mRNA downstream 535603 42428777 ~ 42446480 (+) True AMCG00013770
AMCG00013771 mRNA downstream 584497 42477671 ~ 42487364 (+) True AMCG00013771
AMCG00013774 mRNA downstream 662634 42555808 ~ 42569579 (+) True AMCG00013774
AMCG00013777 mRNA downstream 761818 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013776 mRNA downstream 772108 42665282 ~ 42689203 (+) True AMCG00013776
TU57778 other upstream 1472148 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 2283008 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 3023355 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 3280314 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3472110 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 534927 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 534927 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 534927 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 751813 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1146810 43039984 ~ 43044436 (+) True G46840

Expression Profile