RNA id: TU58242


Basic Information

Item Value
RNA id TU58242
length 1287
RNA type TUCP
GC content 0.51
exon number 2
gene id G46723
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42644987 ~ 42648754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACCTTCCTATTGACACAGAAACAGATTGAACATTATTACACAGGCAAAACATCGCTCAGTCTTTGGTTCTCCTTAATTCTCAAGAGCTCTTTTGTTCACAGAAATCACATTATCTGTGCAGGTAGGCCTTTGCAAGCTAAACTGGCACCCCTTGATTCTCTACTTCTAATTCTCAGAACAAAAGTGgaaagtaaaacaagaaaaacaaatgtaaaaacgtGGATGCTGTGTTCCAGCTTTGGCTTCCTTCCCTTTGTGGTTTTTATACCGGCTAGCTTTGCTTCAACTTACAGAGCCAAGccatattaaaacaaagcattccCCCAGAGACACTGAATTTGACCAGTCTTCCTAGATTGGCGAACTGGAAGCGAACATTTCGGCATTCTGCATCATCGGCTGCCCCAGGCCACACGTGACGCCCAATGCACAGGTACCAGTTACTGCTGTGTTGTACGCTGCTCTATGTTGTGCTTGGTGTTGCATACGTATCTCATTTCGATATGGCAAGGCGCTGAACTTTGAACCCACTGCATATGAAATAGCTCTATATGATCTACTGTAactacaaaagaaacaaacaaatcatgggggagggtggggacacaaaagaaaaccacaacatCCCGCTATGACCCCGGGAAGTGGACTAGCTCCAGCTCCCCAGGCCTCGGCTGCCCTGACCCTGTACATACCTGGCTGTAAGTCACTACTGATAAGTTGGTTTGAAGACCGTTTGGTGCTATATTTACAGAGTTGTGTGACAGTCCATTTTGATCTTGCTGGATTTGGTCTGGCGCAGGCTCCCAGGGGCCCCCGGGGTCCTTGAGGCTGTGGTCGTCATCATTGGTGGCATGTTTGTTCTTCTGCGGCGAGGCGAAGGGGTTGAAGTTGCCCTCCACGCTGCGGTGCGGCTGAGTGTTGAACTCCGTCTCAAAGGAGGACAGCTGCTGCGTGACGCCCAGGAGCCCGCCCACCTCCACGCTCAGGATCACCCAGATCACGTCTGGCCAACGCAGGCAGGAGGGACCTCCGTAGAAGAGCCCAGTTGCCGTGCACATCCGCCACTGGCCCTGGTACATGCCGGGGGCTGCTGGGCTTCGCATCTGCACGCTGACATCTGCCACTTCCTGGGGGTCTAGCGAGCGGACCATCACCATGTTCACATGGCCAAACTGGTCTCCCCCCACGTACTTCAAACACACTCCTGGAGGCCATGACTCGGctcctgaaacacacagcaaGCCACGTTGGTCTtagtatacagtacagtactggcTCGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58217 lncRNA upstream 145388 42495746 ~ 42499599 (+) True G46701
TU58160 lncRNA upstream 751813 41845308 ~ 41893174 (+) True G46652
TU58024 lncRNA upstream 1231387 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 1440838 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 1759358 40882849 ~ 40885629 (+) True G46455
TU58243 lncRNA downstream 1436 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 43452 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 44908 42693662 ~ 42695623 (+) True G46734
TU58277 lncRNA downstream 54902 42703656 ~ 42792219 (+) True G46739
TU58345 lncRNA downstream 328858 42977612 ~ 42980239 (+) True G46798
AMCG00013774 mRNA upstream 75408 42555808 ~ 42569579 (+) True AMCG00013774
AMCG00013771 mRNA upstream 157623 42477671 ~ 42487364 (+) True AMCG00013771
AMCG00013770 mRNA upstream 198507 42428777 ~ 42446480 (+) True AMCG00013770
AMCG00013761 mRNA upstream 857593 41764744 ~ 41787394 (+) True AMCG00013761
AMCG00013759 mRNA upstream 1007762 41621764 ~ 41637225 (+) True AMCG00013759
AMCG00013777 mRNA downstream 6238 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013776 mRNA downstream 16528 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013780 mRNA downstream 69939 42718693 ~ 42723943 (+) True AMCG00013780
AMCG00013782 mRNA downstream 84791 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013783 mRNA downstream 136673 42785427 ~ 42814143 (+) True AMCG00013783
TU58194 other upstream 203742 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 203742 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 203742 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2271827 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 3082687 39561973 ~ 39562300 (+) True G46244
TU58393 other downstream 391230 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 438535 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 789738 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2386018 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2677904 45326658 ~ 45360882 (+) True G47206

Expression Profile