RNA id: TU58253


Basic Information

Item Value
RNA id TU58253
length 341
lncRNA type inter_gene
GC content 0.22
exon number 1
gene id G46730
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42692206 ~ 42692546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGggaaagtaaaatactgtttattaggtttaagtattttacattacgtaaataaaaacaattcaatttttaatacttgtgattaaaatcattaaaatgtcagtccttaaaatcacttaaaaaaatttaaaatctttgtgattttaacaaaaactaaaacaattaactttaaaataaacgtgctcaaatcaacaaaacaaacgtgataaaagcaaaaactgcacaccaacaaaagggtcaaatacattgaaaataactgaaaatgcattgaacaaaataaagaaacaattaaaaagtaaaaataaaaaacaaacaaaaaaggtccaatgcattttaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58243 lncRNA upstream 37214 42650190 ~ 42654992 (+) False AMCG00013777
TU58217 lncRNA upstream 192607 42495746 ~ 42499599 (+) True G46701
TU58160 lncRNA upstream 799032 41845308 ~ 41893174 (+) True G46652
TU58024 lncRNA upstream 1278606 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 1488057 41203064 ~ 41204149 (+) True G46508
TU58257 lncRNA downstream 1116 42693662 ~ 42695623 (+) True G46734
TU58277 lncRNA downstream 11110 42703656 ~ 42792219 (+) True G46739
TU58345 lncRNA downstream 285066 42977612 ~ 42980239 (+) True G46798
TU58364 lncRNA downstream 306193 42998739 ~ 42999135 (+) True G46814
TU58418 lncRNA downstream 393844 43086390 ~ 43086600 (+) True G46861
AMCG00013776 mRNA upstream 3003 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013777 mRNA upstream 30362 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013774 mRNA upstream 122627 42555808 ~ 42569579 (+) True AMCG00013774
AMCG00013771 mRNA upstream 204842 42477671 ~ 42487364 (+) True AMCG00013771
AMCG00013770 mRNA upstream 245726 42428777 ~ 42446480 (+) True AMCG00013770
AMCG00013780 mRNA downstream 26147 42718693 ~ 42723943 (+) True AMCG00013780
AMCG00013782 mRNA downstream 40999 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013783 mRNA downstream 92881 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013785 mRNA downstream 150029 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013786 mRNA downstream 200720 42893266 ~ 42936143 (+) True AMCG00013786
TU58242 other upstream 43452 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 250961 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 250961 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 250961 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2319046 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 347438 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 394743 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 745946 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2342226 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2634112 45326658 ~ 45360882 (+) True G47206

Expression Profile