RNA id: TU58277



Basic Information


Item Value
RNA id TU58277
length 212
lncRNA type read_through
GC content 0.36
exon number 2
gene id G46739
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42703656 ~ 42792219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgtgtgtgtatatatatatatatatatatcacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58257 lncRNA upstream 8033 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 11110 42692206 ~ 42692546 (+) True G46730
TU58243 lncRNA upstream 48664 42650190 ~ 42654992 (+) False AMCG00013777
TU58217 lncRNA upstream 204057 42495746 ~ 42499599 (+) True G46701
TU58160 lncRNA upstream 810482 41845308 ~ 41893174 (+) True G46652
TU58345 lncRNA downstream 185393 42977612 ~ 42980239 (+) True G46798
TU58364 lncRNA downstream 206520 42998739 ~ 42999135 (+) True G46814
TU58418 lncRNA downstream 294171 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 558634 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 640157 43432376 ~ 43452015 (+) False G46940
AMCG00013776 mRNA upstream 14453 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013777 mRNA upstream 41812 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013774 mRNA upstream 134077 42555808 ~ 42569579 (+) True AMCG00013774
AMCG00013771 mRNA upstream 216292 42477671 ~ 42487364 (+) True AMCG00013771
AMCG00013770 mRNA upstream 257176 42428777 ~ 42446480 (+) True AMCG00013770
AMCG00013785 mRNA downstream 50356 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013786 mRNA downstream 101047 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013787 mRNA downstream 144782 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013791 mRNA downstream 273117 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 311915 43104134 ~ 43108636 (+) True AMCG00013799
TU58242 other upstream 54902 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 262411 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 262411 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 262411 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2330496 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 247765 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 295070 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 646273 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2242553 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2534439 45326658 ~ 45360882 (+) True G47206

Expression Profile