RNA id: TU58364



Basic Information


Item Value
RNA id TU58364
length 397
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G46814
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42998739 ~ 42999135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tctaaacccatgttgactatctccaagaatatggttttcattgagatgctcctctattttctgtctaatcattttttccaacattttacaggtgatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcccctttcttgtggattggtttgacatttgctgtcttccagtcagttgacacatcccctgttctaagtgtctttcaGATTATTTGAGTTAGcgacctataaataatttccctcatttctttaagtactgttggaaatatcccatctggcccaggtgatttgtttgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactggttgttaacctgtggcatg

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU58345 lncRNA upstream 18500 42977612 ~ 42980239 (+) True G46798
TU58277 lncRNA upstream 206520 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 303116 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 306193 42692206 ~ 42692546 (+) True G46730
TU58243 lncRNA upstream 343747 42650190 ~ 42654992 (+) False AMCG00013777
TU58418 lncRNA downstream 87255 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 351718 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 433241 43432376 ~ 43452015 (+) False G46940
TU58523 lncRNA downstream 442362 43441497 ~ 43443296 (+) True G46941
TU58520 lncRNA downstream 445823 43444958 ~ 43452015 (+) True G46940
AMCG00013787 mRNA upstream 52400 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013786 mRNA upstream 62596 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013785 mRNA upstream 131830 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013783 mRNA upstream 184596 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013782 mRNA upstream 260518 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013791 mRNA downstream 66201 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 104999 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 279996 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013807 mRNA downstream 426820 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013811 mRNA downstream 471322 43470457 ~ 43487228 (+) True AMCG00013811
TU58242 other upstream 349985 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 557494 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 557494 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 557494 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2625579 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 40849 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 88154 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 439357 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2035637 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2327523 45326658 ~ 45360882 (+) True G47206

Expression Profile


TU58364 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

TU58364 Expression in each Bioproject

Bar chart with 7 bars.
TU58364 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.