RNA id: TU58393


Basic Information

Item Value
RNA id TU58393
length 4318
RNA type TUCP
GC content 0.47
exon number 2
gene id G46840
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43039984 ~ 43044436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCAGGCTCCAGGTCCACAAACACAGCGCGGGGCACATGCTTGCCCGAGCCAGTCTCACTGAAGAAAGTGTTAAAGGAGTCATCCCCGCCACCAATGGTCTTGTCGCTCGGCATATTGCCATTGGGCTGGATGCCATGCTCCAGACAGTACagctcccagcatgcattgccAATCTGTACTCCTGCCTGGCCCACATGGATGGAGATGCACTCACgctacacaagcacacacaatgcagaggatagggggagagagacagggaaaaaagaaaaagacaaaacaaggcCATTAGACCAGGTCCTTACCCACCACCGTTGGCTCCAGGCAGAAGAGCTCCCAGCAGGCATTGCCAGTCTGAACCCCCGCCTGGCCCACATGGATGGAGATACACTCGCGCTGTAGGCCAACAACAACACCATCACAACATCCGCCTTGACAATGCCAAGCTGCGACGCACGGAGAAGACCAACGCACTCTGGTCACACTTGTTTCTAAAGAGCGCCACACAGGGCAGCGACAAGAAGTTACACAGTATTCTGAATCTGCAGCAGTTCGGTTAATTCTGGGAAAACCCAGCTCCAGTTCTGGGATGCCAATTTTTCTCAACAACATACCGACAACAGGTCAACAACACTTTCCTCTTTATTTACTATTAAACAGTTAAGGGATGCCCCACGAGGGGTTATTCCAAAACATCAGACAGAAAGTTGCTAAACAGGATATGGAGCAGGAAATGGTCTCCAGTCaccattttgtttcaattgGGTTATACTCAGGCATGGCCTTTTCACATCACTAAAATACAGAGGGccttaaaatttaaataaacaaggatTTGATCAATAACTACTATAAAatcttaaacaaataaaaataaatccagtaCTGTACATGGAATACAAGCCTAAAGGAAAGCAAAGAGTGTTTAGGAAGATTTAAAGACCCTCTATAAAAGTGATCTCCAGGAATGAATGCTCCAGAAGCACACCAAGAATGTCTGGAGTGAAATGCTTTGCAGCAACTACACCTGCCCCCGTCTATGGGGAAGAATGCAGTACAGTGGACAACTGCTATTCCTTATCACACAGGGCTGTAAAGTTGCTTACAGTTTACATCATGAAGTGCAGAAGACTTTGTGTGTCCACAAGGCAATAAAAACGTAAGCAAAGGGGACATCTGGCAAATCATTAGTGCCAGTCAGTAATATCTGTCAAACAATAACACCTACATAATCCCATAGTGGAAACCAGCTTTAAAAGGGGTTACGACCTCTCCAAGAATTAAACTTCTGATAGACAGGCAGCAGCGTTACCAAAATTTCATTTTGTATAGgcaagaaaagcagaaaagcagGGGACTCTTTCAGAAATGCTCAGCTTTGACCTGTACTTCTATTCAGCTTGTGGTTAGCCGTTTATGAGAGTTCATTAGCCCTTTACAATGCAGGACTCGTGCAGATTTCCAGCAGGAAACGATTACAGAAACAGCTATGCTGCAGAACAGCCTTCAGTCCTGGCACAACAATAGGCCCTCACAGAGAATCTCTCCGCCTGTATCCTCTACCTAGGAACTGTCATcctcacaaacaaaacatttagagATTTCCCTGCTCCAGAAGAGGAATATTCTCCCAGCAGGACCTCATGAAAAGGTCAATCAGCTGCTGGTTTGTGGAACCGTTTCAAGATTTTGCTTCTGGACATATTTCGGCCCCTGCCAGATAAAACTGAAGGAAATGAAGCAGCCAAAGAATTGGCCCCTCCTACAAATTCCACAAAGCGTAGGTGGGGAAGGGAAGAGGCACACCATTTTGAAAGTTACCTACCCTTGAAATATGGGAGGAATCTGAAAGCATTCCAAGAATAAGGAGTGGAACATAGCAACAAAATGTCCTGTCATCTTACGCCTTTACTGCACAATTGTTCCAAGGGAAAGGACTTTCACAATCTGGAAGTCAACATCAAGGTCACACAATACAACTGCCAAGAGATCTGTGAAGAAAGCAAAGGAGGGCGGCAAACATTGACCTTCACAATAGAGCACTTGCAGACTTCTGACCTCTACTGTGCAGCCACTGTTTGATAGGCAGAAGTCCAatgagagagtggggggggaggaggggacaaaaatatatacacacatgtaatGTATGCTTCTGGCATTGCAACATTTGTTCAAGGCAGTCACATCGTACTGTTCTTGCCTTCTGAATGGTTAATTAAGGGGACCAGCTCGGTCGAAGTTTCCTGTTCACCAACAAAGGCAATAGGGGGTTGGGAGTTGGAGAAGAGATTTCATGTCAACAAAACTGTGCCAAATAAAGCGTGCGAGGCGACAGTCCTTCTCTGGACTTTGTTAATCAGTTAACTTTGAATTGCAATTGAAgttaagatgtatttatatgcCAGAAGACATTTTGATCCAACTGCTGGTTCAAAGTTAACCGATTTTATGCTACAATAAAAATAGGTTTACAGGTTTAGGTTTTGTAGGGTTAGGGAAGGACATGTGGATACTAAACCAGAGCCCCTGCCTACTTACTACACCAGTGCAGCTATCCCACCTTTTCCAGATTTAAAATGGGCTTCCCTTTGGCAGTAATTGATTGACATGTACCAACTCCAGTTCGGCTTTTGTGATGGGCATCGTGACCACCAGGGCACACTGCCATGTGCTAACAGTGACACTCCTCATGTGACAGCTGACTGTGTAACAATTTGATAGACAGTAAAAACAATTCCTgctcagagtcctgacctcagaCCCATAGCTCACAGGGGAGTAAAAGAACCAATAGATTTGACTACATAATACATAGAAATTGTGTCATTCATTCGCTTAGGCTGTACATGCACTAGAAATCCGAATTGAACCCGGTTTAGAAACGAGAATTGATCAAAACGGCACGAAACCTGGTACTAAAACAGCAACTGCGACTGTACAGTACCAGTCCGGCTTCAGCACTGCGCAGGGGCGAGACGGGGATGCGGTGGCGCCGAAATTCAAAGACGACACAATTTCAGGAAAGAGCGAAGGTCCCGTTCTGGCgacgcagatttccgcagttctgcgcagatgtgCGGAATCCCggcgatcccattggcggagcagcgcagaactCCGCACATCTGCGCCACACGAACGCCACCTTAGATTCGGCAACGCGGCCGACGTGTTATTACTCGTCTATGAAAGAGGTGGAGCTGATCACTTCTGAAacttcctccccctccccctgtgCCATGTGTGTGGTCGACAGCCGCAAGTGTTACAACATGCCTGGTTTACTACCTGTCGGACATGTTACTAACTTTGAATGGCAGGACTGCGGGGATGGAGAGAGCAAGAACAAAACCAATCTGTCTCTGCAAACCACTGACGCAGCAGAACTGAACCAGCTAAACAGGTTGGCACCTCAGTATAGTCTCTAAAACTCAAATCCAGGTCCTCCCATAAGTGCTCCCAGTTCGATACAGGGGGAAACCCCTCCTTTGGACAAGTGGTCTGCAGAGGTCTGACGCCCGTGTGCGTAAACTGGCACGTCAATCAGGTGGTGTAAAGCGCTTACTCATCACAAAAGACACACATGTGGACTTCGCTCCAGCCTTTTAAACCCGTGCCTGTGGAAGTGGGGTATTAATCACGACAAAGGAATGTGCACAGGGCAATAATACAGAAGCGTGCAGCTGCTCCAAGGcctctgccccccacccccacgccACCCGAGACCAGGGGGCCCCTTCAATAGATTCCGCACATTCCCGCAACGGGGCGGACAGGCACCGCACTCTCCTGCCAGATGCATTGGGGATAAAAAGAGTCCGAGAGAAAggcattaaaaagaaagcatgTCCAAATGTGAGATCCACTCCCAGCTGCATATATGAGAGTCGTCACCGGATCCATGTTGTCTGCTTTGCACGGAATTCAGAACTTAGAACTTAGAACTTAGAACTCTAGAAGCTGCGCGCCAATTCGATAGAATAGTAACAGATCCATTCACGACGCCCGTTTATTACACGGTTACTACCGCGACAATGCGACGTTTCATTACGTccaaaaaacaatttaacattcaCCGTTTATACAGTAACATTTCAACTTTGGCGCCTTTTGCACTGTGGCGAATAACTACGCActggaagaaaataacaaaaaagtaacttaccattgtgtctttaaaagaacaaaagagTTAAACAAAGTGCTAGTGGTTTTCAGGTCTCTTTGAAAGAGGATTTACATGTAGGGTTTGGTTTTCCGGAGCTCCGTTGACTCTAGACGCGCTACGGGTCTCCGCCAACACAGCAATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58364 lncRNA upstream 40849 42998739 ~ 42999135 (+) True G46814
TU58345 lncRNA upstream 59745 42977612 ~ 42980239 (+) True G46798
TU58277 lncRNA upstream 247765 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 344361 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 347438 42692206 ~ 42692546 (+) True G46730
TU58418 lncRNA downstream 41954 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 306417 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 387940 43432376 ~ 43452015 (+) False G46940
TU58523 lncRNA downstream 397061 43441497 ~ 43443296 (+) True G46941
TU58520 lncRNA downstream 400522 43444958 ~ 43452015 (+) True G46940
AMCG00013787 mRNA upstream 93645 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013786 mRNA upstream 103841 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013785 mRNA upstream 173075 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013783 mRNA upstream 225841 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013782 mRNA upstream 301763 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013791 mRNA downstream 20900 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 59698 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 234695 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013807 mRNA downstream 381519 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013811 mRNA downstream 426021 43470457 ~ 43487228 (+) True AMCG00013811
TU58242 other upstream 391230 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 598739 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 598739 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 598739 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2666824 40350652 ~ 40373160 (+) False G46345
TU58419 other downstream 42853 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 394056 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 1990336 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2282222 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2771936 45816372 ~ 45817955 (+) False AMCG00013872

Expression Profile