RNA id: TU58419


Basic Information

Item Value
RNA id TU58419
length 2319
RNA type TUCP
GC content 0.43
exon number 2
gene id G46862
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43087289 ~ 43089643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGGGCAGCAACAGTTTATTCTTCAGCGTGGATCTCAGTGGTTGTGGCAGTTTCTGGAGCTGCTGTGTGGAAAAGCATACACTGCACTGAGACATCACAATACTACAATTTACAATTGCCATttgtcagtattttttttcttttttctaaatgaaattTGGAGTTACACAGTTCCCTGCCCCATCCTTTTAGGTTCAATAACCCATCCTAGTCCAGGAGAGCCATAGTGTGTTCCGGCCTTTGTTTCTTTCAAGTCCCTGTGAACTTCTTGTGAATGAATTCTTGTGCTTAAGTGGTCATCATTACCATTCGTTTGTAGATATTCCTCGATCGAGGACAGGGAGCCGCTTCTAAAATCTACTAGACTGTGGTTCTCCACAAACAAGCCTGGCCCTTTCTATGGCTACCACAATATCTGGCAACAAATTGATATACTTTCCAGGCCTTAGAAAGACAAGGATAATTAATGACAGAGGTGCACAGTTAGGTCACTGTGGGACAACACAATTAATATTCACTTTGAACTAACTAAGTATATTAACATACAATGTCGATCAAATAAAATGAGGATACACAGGTTGAGAGGAGGCAAGACTATAGTGtcataagaaaaacataatacaaataataacgtGGAAAGGCATGGAAATTTAACCTCAAATAACCGGAAACGTGATTCTCTTTACATTGGATATAGGGACATTTCACAGCCacttaatacacatttttctgGCGTTTGTTTCAGGCAACCCAACTTTGGTCTTAACAGTTAAAAAGGACGGAcgaatttcaaaatgttattcctCTCTTACGACTAAacgttttaattgaaaaagctAAATATTGGACATGCTGCCGGCAAATTAAAAgtttcaaatatgaaaatggctaaAAGGAGAAACTACACCGCAACTGCATTCAGACAAAAACAGTGATTTGAGTATACGCTACATATAAAAACCACAGTCATTACACTGTAGCCTTATTAAAACTAATAGAACACCACAAGTTATACATTTGGTAGATCTTAAAGCAATTtcttacagtacagtaatactTAGATTTTCTCCAAGTATAAATAGTGTTACAGCCATCTTAAAAAGGAAGCTTCCACTTATTAAACAAGATaaaaactttatataaaacacatgtatacaAAATTGCTTGCTTTGTACGAGTCTACACAGGATTTGATACATTACCGGAGATAAGGAGACTTATATTAGGGTTTATGGAGTAATTGGTTTGGtattatttaactttaaaaacagattaattaaaaaaaaaaaaaactactttttgaTGACAGTTGGTTGCCTGAAACAAacttagaaacaaaaaaataacagttgGTCCATTTTCTATTCAAATTAAGTTCTGGATTGGCCGTTTCACATAATCTAAAATTATGACACATTCAAACACCTAAATGGGgagaaaaagaatacaaatcaaCATTTTCAAGTCAGTCATGTCtatatttttgtcattaatctagtttaaaatgttttttttttttttgtcagttattaactaaaatatttttttttcttctactcagtAATACAGTTAACGGTGATACAATGAAACATACAAAGCGTTTCAATACCAAATTAAACGACTCTAAGGCTTAAAATtcgaagaaacaaaaaaggttaaaaacgacataaaaacaaaaagtggaaCTTGAACAGGAGCTTCCAGTTTCAACTTCCAGTCCTGTGTAGTCCCTGCAGTATCTGACACGAGTGGGGGCCAGGACGCAGCGCCCACAACACCCCCGTCGGGGCATGAAAGCAGCGAAGGACAGCCGTCTCCCGtcaccctcctcctccaggcCGTCACAGGTAGGGGAACTCATTGATTTTCCTGGGGCTGATGGGATAGCCGCCGTACACCGCGCCGGCCCGGGAGGTGGCGATGTAGGGCTGAGCAGAGAACTGGTGCTGGAATTGGGAGGTGGGCACAGTGGGCGCCCCGAGGAGGTTGTGCGCCATGCCCCCCGCCTTCCTGTGAAGCAGCCCCGAGGCGTGGGGGGGGAACGTGGCGCTGGCGTTCACCTGGTGAGAGCCGGGCTGTGGGGCTAGCAGCTGGGCCATGGCGGAGGAGGCCGAGGGAGCGTAGCTGTACAGGTGGGACAGCCCGGCGCTGTGCGGGGGTGCTTCCTGCAGGTAGTACTGCGCATGGGAGGAAACGGGCACATAGGCCTGCTGCCTGCGAGacaagctgctgctgctgctgctgctactgctgctccggctgctgcggctgctgctgcccccccaATCCTGGGAggaggacactgggggctgcaCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58418 lncRNA upstream 689 43086390 ~ 43086600 (+) True G46861
TU58364 lncRNA upstream 88154 42998739 ~ 42999135 (+) True G46814
TU58345 lncRNA upstream 107050 42977612 ~ 42980239 (+) True G46798
TU58277 lncRNA upstream 295070 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 391666 42693662 ~ 42695623 (+) True G46734
TU58474 lncRNA downstream 261210 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 342733 43432376 ~ 43452015 (+) False G46940
TU58523 lncRNA downstream 351854 43441497 ~ 43443296 (+) True G46941
TU58520 lncRNA downstream 355315 43444958 ~ 43452015 (+) True G46940
TU58532 lncRNA downstream 373128 43462771 ~ 43464006 (+) True G46949
AMCG00013791 mRNA upstream 17368 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013787 mRNA upstream 140950 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013786 mRNA upstream 151146 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013785 mRNA upstream 220380 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013783 mRNA upstream 273146 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013799 mRNA downstream 14491 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 189488 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013807 mRNA downstream 336312 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013811 mRNA downstream 380814 43470457 ~ 43487228 (+) True AMCG00013811
AMCG00013812 mRNA downstream 401143 43490786 ~ 43514457 (+) True AMCG00013812
TU58393 other upstream 42853 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 438535 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 646044 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 646044 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 646044 42428101 ~ 42441245 (+) False AMCG00013770
TU58527 other downstream 348849 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 1945129 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2237015 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2726729 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2845016 45934659 ~ 45941906 (+) True G47398

Expression Profile