RNA id: TU58646


Basic Information

Item Value
RNA id TU58646
length 3317
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G47032
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43700924 ~ 43712011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagtgaaagcattttaattagaaacaagacaaaactaattttatttttttatttgttaaaaaagaaagaatgacaacaaaataaaacctttcatgGTCAATACCATGTGCCTCATGATACCACAGTAACGTCTATAGATCATTGAGAGCACTACAGGAAATCAATAGTTTGCCGACACACCTAACAGGAACACAAAGAGCTCAGAGTGCCAACAACAGGTCCAAATGGGGGGCATTTGCCACCATATCCCAGTACAGTCTTTCCTTAGTTCAGTTTCTTTGCATTTCAGAGAAAAGGCTGGGGGTGTTGAGACCTCACCAGTTCCAGTTTCTCATACTgcatctttcatttaaaaatgaatgggcCATACAAACAATGTAGGAGAAACTATCTGtacataatttttaaaaacctaGCTATATTGCATCTTTTCCTTTTAAGGTcaccatttaattttttttttcacacatttcagtCTCAAACTAGTTAAAAACAAGTCTTGGAAAGTACTATGAAACAAAAAGGCAACAatactaaaataacatttaaatagaaccttaaaaaaaaaaatctactgtaCATAAACTGAATTGGCACCTTAACggcaataaaaactaaaatctgttACATTGATGTAGGTTGTCATGGAAGTTTGTGTGAAAACACTAGTGATCTGTAGCCTCTGCAATATTATGGAGGTCACCTGAAATCTCAAGTCATGCCCATATTTGTGGAGTACAAAAgaatgaacaaacacaaataaccaCAACCTCCACTTATCAGTTGATGCCAAAAAGATCAAACACTCTTTTCAAAGAACCAggccattttaaaacattgaaattcGATAAGCAACATACAAACCCCCTTTGCAcaatccaaaacaaaaatataaaattctaAAAATGTGCAAGGAACTCCCTTGAAAGGACATCATCAGGTTTTGAACAGGACTCACTGAAGGCTGAAACTTCTGCGCgtttccttccctctctcccagaGCACTTCAGTCAGTTGTTGCAGAATACATCAGAAAGGCTTCGAGGTCAAATGGCTATCCAAAACAAACGGGCGAGATCCTAATATTACCGACATTAGTTTCCATTGTGTGCGCATTATGTGCTCCTACCTTTCATAACCGAATACTCGGAGCAGGATTGTGTTTAATGTTAGCTCTGAAGATACGATTTCTAAATCTGTGATTATGCTTACATGGAAAACCATATTTTGCCATTTCTGCAACATGGGATATAAAACACTTCCTAATCAGTTTCCATTGTATTCATGGGTTCATACCATTTCCAGGTAGCCAATTGacctttacaaaaaacaaaaacaagatcagACGCATCATAAAAGGGGACGTTGCTAAAATAAGTGAGCTGGTCTCCGGTTTAAACAGGCTAGACAGACATCGTCCGTTTCCAGTGAGAAGGACAATggatgtaaatgtaatttggtACTACTCTCACTACAGTGCAAATTAGTTCCTTATACCCTTGGGAGAAAAATCAGGCAGTTAAATTGGCACATTTCTTATACAATACATACTggaacacacacattaaaagctGCAGCAAGTTTTGAATTTAAGAATATAGAGATCCCCCACCAACCCTGCATCATGGTTTATCAGAGAGACTACCAGACCGTGCAACTGACAGATAGTGTAAACCACTTAAAACAAGTCCTTGTTCCAAAAGGTTGGCACAGGACCAATATACATgtcacttatttaatttgttacttcTATAATGCCCGTCCAGGTCATGGCATGATGGGTGGATCGTCGAGCAAGTCCAAAAAAAGTCAGCAATCCGACTCCCAGAACTGTGCTTGGGAAACCAGTAAGGAATTTGCCATGTTTAAGTGTGATTAATGTCGGCGcttctgcatttgtttacatatcCTGGTCTGCTGGTGCATTTTGTTCCCGTTACGCAACATTAACATTGAACATTTTGTAAGCATGCCAAAAAAAAGTcactaccacaactgaagcttTAGTGTAAATCAGTGGGTTATTGTTGGTTTGTGCACCCAGAGTTGGAATTGTCAGTTCCCTGATTTAAACCTGTTCCAAGGGATGGGTGAAGAGAGTCATTTGGACACAGATAAACACTTAAAACTGCACTTGGTGTTGCTCTTTTAAGGACTAGTCTAACTTATGCAATTATATCGATTAGAACACAAACCTATATacgaaaaaatgtatataaagtatTAGTATTACAATACTACAAAGACTGAAAATGGTTATGCCTTAACTGCATTGAAGCCTGAGAtcagagagagaatgtgtggtGAGGAATCCGTGTAGTCTGGAGTCACACGGGTAGAGAGAAAAGTGAATGTTGATCAATAACTTTTTCTGGAAGAAAAGCCAGGGAAGGAATCTGGAAGTGAAATGAATCTAACCTGGAtttcacacacacctgtagGTTTACTATACAGAATACAATCAGAATGAAATAGCCCTTGTTGCAATTGCTGAAAGAATGGGATCAAATGGGTTGTCCAGAAAATCAAAATCTACGCGTTTAGCTCTTTGCAACACTGCACAGACTAAGATGGATCAATATACAAGTTAAgttaggtaaaaaaaaacaaaaaaacattgcactACAACTACCGGCCTACCACCTGCGCTTGAACACCTGCGTCTGAAAGAATTAAACCACCCTCGCTGAAACGTGATCATAACGAAGGTCACAGGGATTGTGGTTTCCTTTGATCTCAATATCTCAACACTTTTATATTACATGGAATGCGTCCATCAagatttttgtgattttaaattactttttacacCCACAGAGCTGGTTCAACTCAGCATCAGCACATTGAGAACTAATTTCTCAGACGCACAGGGAGGCTGGGGGTGTTtcagggggtggggagggaagTGATGTAGGAGTTGTGGAGAGCAGCAGTTCCATGACAAAAACGCTGCCGTCTGACCCAAAGAGTAATTTTTTCTCCTTCCATATGAAAAGGCACTAGATGCACATGTTCTACCCGGACGGACTAGAGGACGCCAAAAGGTCCTAAACGCTGTCCTCTGAGGTTTTCAGCTCCGTGCTGGCTCTCGTGGAATTCACGTCGTTGCTGGCCTCCTTCTCCTTGATGGCATTGTCCAGGTTCGTCTCCTCCTCCTTGTTCTCCTGCCTCTCTCTGATCTCCTCGGCCTTGCGCTCCCGGTCCAGCAGCCTGTAGTTGATCCCCATGCCTACGAACAGGAAGATGCTGCCGATGACCATGACGATGCCGCAGCCATAGTAGGTGTACTTGTAGTCACCGTAGACATCGTTCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 236918 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 248909 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 248909 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 257628 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 348509 43350853 ~ 43352415 (+) True G46905
TU58655 lncRNA downstream 215403 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 518142 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 584791 44289057 ~ 44291796 (+) True G47106
TU58733 lncRNA downstream 594003 44298269 ~ 44298664 (+) True G47107
TU58736 lncRNA downstream 625027 44329293 ~ 44329547 (+) True G47110
AMCG00013824 mRNA upstream 4599 43687352 ~ 43696325 (+) True AMCG00013824
AMCG00013818 mRNA upstream 25683 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013816 mRNA upstream 32440 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013821 mRNA upstream 69326 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013817 mRNA upstream 80215 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013826 mRNA downstream 399905 44104171 ~ 44123031 (+) True AMCG00013826
AMCG00013827 mRNA downstream 441205 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013829 mRNA downstream 499148 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013833 mRNA downstream 825452 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013834 mRNA downstream 931213 44635479 ~ 44661638 (+) True AMCG00013834
TU58527 other upstream 260226 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 611281 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 656488 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 1052170 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1259679 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1330506 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1622392 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2112106 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2230393 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3365435 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile