RNA id: TU58732


Basic Information

Item Value
RNA id TU58732
length 2740
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G47106
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44289057 ~ 44291796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTTGAATGTGATGTAAATACAGTCAGAGGCAGCATTTTCCAGGCGGTATGTAAAGTCCATCATGCCATTTCACAGGCACTTGAACCTGCATATATATTGAACAGCGTGATCTTTCAGCTGCAGCAGTTCAATTGAGAAACGGCACTGAGTGAAACACAAGTCATCAGTATCTCTGAGCAAAGTACaaatatgcatgcatttaattagtGCACCGATTATTGCGGTTAAAGAATGTGCTTTGTctatatatttccatatacaatacatattgtaGCCATGTTATTTTAGGTGTACAGATTGATCTTAAGAAAATGGCCCatccaacaacaacacaaatacatacttcTGTGTGGCTTTACAAGGGCAAATTGTAGGGCTCTGAAAAATATCCCATCCTACTTCCCCGCTTAAGAAAAAAATCTCTATTTCCAATAAGTATGCTTTGGCTTATCTGTTCTATATTACAAGTTAACCATTACAAAACAGTAGTAATTATCAACCAGCTGGAGAAACAGGTGAAaaagtgtagtgctacattttaagGTTTCTTTCCTTTAAGTTCTCTGTATCACATAAAAAATtgcataaaatggaaaaaataaaggactCTCTGTTGCCTATGCTGGTAAAAACCCGTCTCTCTTCACCAGGTTGAGTTCTTCACCTCTGTGGGGAACCCAGTAGTGTTACAACACTGTGTTCATTGCAGCAGTTTGAGTTAACAATTTAAAGGCCtgttttcattcaaataaatcaatgcagatCTAAATGATTGGGCTTTGAATAAACTTGACATATTCTGCATTTTTGAGCAGCTCAGCATCAGCAAACCAACGCTGGCTTGGAAAAAGTCAAGTGAAAGAGCTGACACATTTTTGAAAGAGGAAGTAAATCTTAAAAAGCTAGATGTAAGCAAAACCACAATTTAACCACTCCGAGAGCTGATTGTTTTgcttctaataataaatgtccAGAACCTTTAATTGTTCTCTTATTGTTTAATGGTTCTTTTAacctttttccagttttatattGTGGGAAACATAAGGTCAGCCTTTTAGGGTAAATCTCACTGTTCATCTCTTGGTTTAAGAGACAGGTAGCTGtacagcacaaaaacaaaattataaagtgtttccaaaatgttttagGTCCTTTTTGAGAGACATCAAGGCTCAATTAAGGCTCAGTTGTATTCTTAATCTCACTGTTGGGAATCACAGTAAAGATGTGAGAACATCTGTCTGGTCATTGGACTTCTCAGTGGGTTTATGTCACGTTTTCTTGTCCCACTTACCTTCCACAATGTGGAATCCACCTTTAGATATTTTGAATTCAGTGACCAATAAGAACGTAATAATTATGcaactttagatttttttaatatcaatttttattttctcatgtcgtttttactgtactgtactgacaagaacaataaaaatgacatgagaaaacaaattatactgaAGAATTCAAGAGCACTGTTTGCATTTCTGGGCAGCGATTGTGTCAGTATCTATAGGTATTTACTGTTACAGGCGCTTCTGCATATTTCTAAATTCAGAACTGAGCCAGGAGCAAAAGAGATGCTGATTatgacaacaaacaagcaaagatGTATGTAATGAAAAGATCCTCCtcttacaaaatcaaaaacaagccAACAAAAATGATGAACGtaggtttaaaatgtaatgtcttgATACTTGTAAAGTGAGAACATGTAACACAAAGACATGTTCCCAATGTGTCCCTTTTTCTCTCTGCTTATGTTGCTAATTGTTTTGCTAATTGCATAATGGAGCAAAATACATAATGGCAATTCAGAACAGCCCCTTCGTATGATCACATGAGAGGTATATAGGAGGCAAATGACAGTGTCACTATATATTTTGCCGTTCTGTAAGAGGTCTTTCACGCTGTTTAAAAGGTGTTTGTTCAAAGTCCACCAGGAGGCAgcgctgtctttctttttagaTCCACGAAAACAGTCGGaactggaaatgtttttacCTTCTGAGTGAGGTCTTGGGAGTTATCTGGTGACTTCATTTCCCCCCTATCCTCTTTGAATACCAaattgtgcatgtgtatatgtacatatgtttAACCACAGAAAGGCAAAAAGAAAGCATGGCTAAACAACATCTCCATGTGGAAGACGTTTAGGTTAACATAAAAGTTTCCTATTCGGCACAGATCAAATAATTTCCTATCCTAAAATGTGACTATTGGCACCAACCCGCTGAATACAGTAATGGTATGTATTACGTAGACGTGTTTTACTAAGAttcttggaaaaaatattaGCTGCCAAAGTCTCAAAATTGAAAGTATACCTTGCTTATATTGCGGCAccaaaatcatattaatatgAAAGTCTTTGTTAGTAGCATTGCATTGTAACTATAGTTTGTTTCACCTGAACATTgcaccttttttttcctcttattttttgtttagaacCAAAATTTCAATATACGTCAAATGAAAACCATTGTAGACCATTGCagtatcaaattaaatcaaatcataaGAAATATCATCCATAGCCATGTGATTTCAGAGGTGCTATCTTGAGTAGAAACAACATTACAGATTCCTGCATTTCCTTTTGGGCTTATTACAAAGCCCTAGTATCTTATGACCAAGAAAACTACACAATATGACTTCATGTACACGACAATAAATGACAGTTTCATTAGTGAGAGTCAGGTTATTCATTTTGGTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58703 lncRNA upstream 65656 44222408 ~ 44223401 (+) True G47080
TU58655 lncRNA upstream 369090 43919669 ~ 43919967 (+) True G47040
TU58645 lncRNA upstream 577046 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA upstream 584791 43700924 ~ 43704266 (+) True G47032
TU58532 lncRNA upstream 825051 43462771 ~ 43464006 (+) True G46949
TU58733 lncRNA downstream 6473 44298269 ~ 44298664 (+) True G47107
TU58736 lncRNA downstream 37497 44329293 ~ 44329547 (+) True G47110
TU58802 lncRNA downstream 669813 44961609 ~ 44963472 (+) True G47158
TU58832 lncRNA downstream 976258 45268054 ~ 45268386 (+) True G47184
TU58834 lncRNA downstream 987958 45279754 ~ 45281095 (+) True G47186
AMCG00013829 mRNA upstream 67867 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013827 mRNA upstream 138780 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013826 mRNA upstream 166026 44104171 ~ 44123031 (+) True AMCG00013826
AMCG00013824 mRNA upstream 592732 43687352 ~ 43696325 (+) True AMCG00013824
AMCG00013818 mRNA upstream 613816 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013833 mRNA downstream 237922 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013834 mRNA downstream 343683 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013837 mRNA downstream 403983 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013839 mRNA downstream 609236 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013840 mRNA downstream 641504 44933300 ~ 44940161 (+) True AMCG00013840
TU58527 other upstream 848359 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1199414 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1244621 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 1640303 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1847812 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 742976 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1034862 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 1524576 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 1642863 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 2777905 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile