RNA id: TU58802


Basic Information

Item Value
RNA id TU58802
length 1864
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G47158
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44961609 ~ 44963472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agattGTTTGGGTGTCGAACAAGCCCGACCATCCTAAATTCACTCCATATATATCAAGAGTCCtgcaataaattatttttggttggcttacaggtgtttttttattttattttttatatcatttgTATGCTTCAGTTTCAATCTCAGTCATACATTGCTTGTGTTTTCACTAACAATAGAAAGCAGTGTTTGTTAAAAACGGGTCAGGCATCCTTGACTCTTGCCATCCAATCTGCAGAAAGACGATCCGTAGTTAACGATGTAAGTTGTAACACTGGTGTAAACTGGGCGTCCAGGATGCCTGCCTGCCTCCTGCTGTAAACCCCTACTCAAGGACTCACACCGGAGTGAGGGAACGacggtctctctcctcctgctgCAACTGAACAAGCAAAATGCATTCCTCTTGTGTTAATTATGTTCTGAGCTTTAGGTTTGATCTTTGCCCTGCTGTTTACTCATTTTAAACCACTTGCAATTTACCGTGACCTGATTCGGCCGTGGGAATTGGTACTTATACAACCAATTCCTtagattactttcaaatgtaACCTACTTTGAGTAGGTTTTATTCAGTGACGTACAGGCAGACACGGCCGTAATAAACCCTCTGAGTGTCGCCTGCGATAGTTCATCAAAACCATATCTTCAGGAGGAGAGCTCTGCAAACCCACCCCCGGATACAACCTGTCAGACACAAGTGGAGCTGAATTAGTTTGTCATCATGCTAGTCGTTCGATGAAAGGGTTCGACCGGGCGACTTGAGGGTTCAGCTGGAACGAACGCAGGGGCAGGATGGAGAGATGGCACGGCTTAGCAGATCTGGCCGTGGTCCCACTGAGGCGGGCGCCAGCACTGCTGAAGAGATGGAATGCGCTCACCAGGGCCCCGCAGCCCGGCCCCTGGCCTGCCACGGGTGCCTGCTGGCTCCCATTCAAGTGATCACGTGATTAAATCAATAATCTGATTAACGAGAACAGGTTTGACTGAtttccccgtctctctctccgaTGGGCGTTTTCGGGGGCCGTATATCAGCAGGCGGACCGCGGCTCTCCGGAATCAGACAACCTTTGGTGTATTTTAGTAAACCACCGATTCTGTTACATGATGTTGTATTAGGAAGTGATTCCGGTGTGCGATTGCATGGATTGATCAAGACCTTGTGCCTGTAATTGTGCTGTAGTTAGCCGGGATAACCATTACTCTAAACCAAACGCCTGTCCCCAATACCTGAAGCTTTTCAGTATTATAAGTTGTGGTGCTCAATGTCTCGACTCGTGCGCTGAAGAACAACGTGTCGAACCCCAACAAGGAGGTTTTGTGGTTTGAGTTGCTGTGAAGAGACGCAGTGGCTTCTTTGGCCCTCTCTGGAAAGGGGTGGATACTGAACCGGGTCTAAGTGCCCCTCTTTCCTTGCATCATCTCCAGTGACACTGCTTCAATGGTGTAAAGTATCTGAAGAAAGGCAGCTGCACAACGGGAACTGATCCTTTGTTAAACAATTCATTTCTGTGTGATCTGAGGTTTTCTAAAAATGACAAGGGGCGTCAGATGTTGGAGGTCTCAGTCCCGGCTTATCTGTGGTACAAATGCCACCGCTGATGTTGagagtttgtgttttattattaggtACTTAGATTAGTATTATAAATGCCGTGTGGGTTCCTTTTGTCAAACCTGTTTGTTTCTGTCTCCCTCTTACactgaaatgtactgtataaGAAGAAGTGGCACTGGGAAATCTGAATTTGTACAATGATATCAACACATTCTTAGCGGTAAgattgctttttgttgttgttgttgtttttgtttatatcttttatttgatttttgtttttttaaataaatgatcaacGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58736 lncRNA upstream 632062 44329293 ~ 44329547 (+) True G47110
TU58733 lncRNA upstream 662945 44298269 ~ 44298664 (+) True G47107
TU58732 lncRNA upstream 669813 44289057 ~ 44291796 (+) True G47106
TU58703 lncRNA upstream 738208 44222408 ~ 44223401 (+) True G47080
TU58655 lncRNA upstream 1041642 43919669 ~ 43919967 (+) True G47040
TU58832 lncRNA downstream 304582 45268054 ~ 45268386 (+) True G47184
TU58834 lncRNA downstream 316282 45279754 ~ 45281095 (+) True G47186
TU58836 lncRNA downstream 319920 45283392 ~ 45283600 (+) True G47188
TU58837 lncRNA downstream 320368 45283840 ~ 45284159 (+) True G47189
TU58838 lncRNA downstream 323044 45286516 ~ 45286853 (+) True G47190
AMCG00013840 mRNA upstream 21448 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013839 mRNA upstream 42348 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013837 mRNA upstream 264838 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013834 mRNA upstream 299971 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013833 mRNA upstream 430782 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013838 mRNA downstream 95624 45059096 ~ 45065520 (+) False AMCG00013838
AMCG00013841 mRNA downstream 383135 45346607 ~ 45353929 (+) True AMCG00013841
AMCG00013849 mRNA downstream 456441 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013848 mRNA downstream 479614 45443086 ~ 45456185 (+) True AMCG00013848
AMCG00013851 mRNA downstream 527265 45490737 ~ 45494667 (+) True AMCG00013851
TU58527 other upstream 1520911 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1871966 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1917173 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 2312855 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 2520364 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 71300 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 363186 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 852900 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 971187 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 2106229 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile