RNA id: TU58832


Basic Information

Item Value
RNA id TU58832
length 333
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G47184
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45268054 ~ 45268386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgagaaagacctaggagtctatgtggactcctcactttctccatccaaacagtgtggggaagcaataaaaaaggcaaacacaatgctagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggg

Function

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58802 lncRNA upstream 304582 44961609 ~ 44963472 (+) True G47158
TU58736 lncRNA upstream 938507 44329293 ~ 44329547 (+) True G47110
TU58733 lncRNA upstream 969390 44298269 ~ 44298664 (+) True G47107
TU58732 lncRNA upstream 976258 44289057 ~ 44291796 (+) True G47106
TU58703 lncRNA upstream 1044653 44222408 ~ 44223401 (+) True G47080
TU58834 lncRNA downstream 11368 45279754 ~ 45281095 (+) True G47186
TU58836 lncRNA downstream 15006 45283392 ~ 45283600 (+) True G47188
TU58837 lncRNA downstream 15454 45283840 ~ 45284159 (+) True G47189
TU58838 lncRNA downstream 18130 45286516 ~ 45286853 (+) True G47190
TU58840 lncRNA downstream 22887 45291273 ~ 45292900 (+) True G47192
AMCG00013838 mRNA upstream 202534 45059096 ~ 45065520 (+) False AMCG00013838
AMCG00013840 mRNA upstream 327893 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013839 mRNA upstream 348793 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013837 mRNA upstream 571283 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013834 mRNA upstream 606416 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013841 mRNA downstream 78221 45346607 ~ 45353929 (+) True AMCG00013841
AMCG00013849 mRNA downstream 151527 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013848 mRNA downstream 174700 45443086 ~ 45456185 (+) True AMCG00013848
AMCG00013851 mRNA downstream 222351 45490737 ~ 45494667 (+) True AMCG00013851
AMCG00013850 mRNA downstream 283587 45551973 ~ 45569316 (+) True AMCG00013850
TU58815 other upstream 172385 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 1827356 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2178411 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2223618 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 2619300 42644987 ~ 42648754 (+) True G46723
TU58857 other downstream 58272 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 547986 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 666273 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1801315 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2979681 48248067 ~ 48249713 (+) False AMCG00013961

Expression Profile