RNA id: TU58842


Basic Information

Item Value
RNA id TU58842
length 2653
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G47194
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45295503 ~ 45354414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tGGTATAAATTCACTTTAATCACTTTACAAATATtcaagtaaatatttattttcttaacaagGCTCACCtctgcaaaaacaacacattaaaaaaatacatatatatggcaGACAATAGATCCCGATACTTTGTGTGaagatataaaaacacaacaggaatTGCATAAAGAAACCCCCAACCTCCCTGTAACTCAAGGTTTCCCAATCCTGGGCCTTGTGTTCCCAGTTCCTCCGGGTTTGCGGATCCCACTGGCTGCTCCATGACTCTACTGCACCATCGATTGAGCTCAGCACGGGCTTTATAAGACCTAATTAAGGCTTTCGGTGGGCATGCAATGGGACATTTTGAATTGTCTTTCAAAGCTTGTATGTTACTTGAGACCTGCAACTTTAGAACCATTTAAAAGGCCTTACCGAGCTTGTTATTAGCCCACGTAAGAggtaaaataagtaattaattcagctgggacagaaaataaataccgCTGTCCGTAAGGCTGGGATTGAGAACATTTGGTCACAGTGGCTGAGGAGCACACTGTTGTCGCTGGCCAAGACTATCCACCCCCTGGGGCATCCCATCTCTCCAGTACAGCAGCTCTTTAAAGGCTCCTtatctcccttcccctctctttcAATGTCTTATCAACTGCTCCTCTGGTCTGAAAGGGATGCGTTTAGATTATAACCAGCCAAGCCGGCACTCCCGCCCCCCTCACATCCTGCATATACCCTCAGTTGAGTGTGGAGATTACTGGGTTCTCCTCCCAGGAGCATGCTCACAAGCCTTTGTTTCCAAAATGGCCGATCAGCACCAGTATAATGCTGTGATCTCCGTTCCTGGTCCTGGGGATCTCCAGCCAATCACATTCTAGAGGAGTGTCCAGTCAGAGGCTAAAgatcatatttgttttgacCAGCAACTCAATTCTTGAGTATATTATGAAGCGGAGCTCAAATAAAAACCGTAAGACACTTCGACTCAGCAGGAGAAGGGTTGAGGAGACTGTGTGAAGCAGGGAAGCCCAGTTCTGGTCCCGAACAGCTCCAGTATCTTCTGGTTGGCCTCCCACATGATCTCAAACACCTAGGCCAACGAGTGACTCTTAACCGGACTAATTTAGCATGACAAGGAATCAGAGAAACTCTGGGACTCGAGTTGTGCATCCCTGGTGTAAAGGAGTCACTTAGCTAGGTGTCAGTATTTATCCTCAGCCAGAACTCAAAACATGGACCTTGTGCTCCTCAGACTGTGCTTCTGATGAAAGAGGCACTTCCCTGCTCACAGGTGTGCAATTCTCTACACAGCCCCATCATACTGCAATGAGACCCACATCCCCCAGAAACTGTTAAATTTCCTCCATTAATGTTGTTGTCTGCGTGATGCAAAAGGCACATGGTCTTGGATGGCCTGAATTTGTCTACTCTTCTGCAAATTCccacactgcagcactgtgaACATATGCCATGTGCCTCCCCAGGCCCTGGGGACTCCTCCGGGACAAGGGCAAATGGGAACTTAAGCCCACAGGACAACAGGGAGACCACAACCTCCACGGCAAGCATGGCATTAAAATAACGCCAAAAAAGCAGATGGTCCTAAGGTTTCTCCCTTTTGTggttgattgttttgtttgttttgtcaggTCCATCAGTCCAGAAAGACCCGGGtcctgagtgtttttttaaatgcaagaatAATATCACTGAAGATAACGGATCTTAATCTTTGCCAGTTGGCTTCTACTAGACTGAATATAAACTCACCAGAAAGATAATCACAGATGCGTTGTGAAAATAAGCCTGTAAACTAGaatcaaaattaaaaccttAACCGCACACTGAACGCCCCTCCAGTTCGTAGGACTGGTGAGTGGGCAGGGTGACCTTTTAATTGCCGTTTGGCAGTTTTCCTGGCTtgcaaaaatacacaaaaagcaaaacaaggaCCTTCCAATGCAAAGTGCAGGCGCTGAAATATAACCGGCAGCGGGAGAAATCAGTCTCCTCTGAGCGCTTCACGGCCAAGCTGTGGAACCAACACCAACACTGAGAAACTATATCTATACCGATCATCGACACTGTAAACCGTTTTAAAAATCAAgctgaaagacagaaaacaatgaGTGAAAGAATCGGGGAGCGCATCGACCGTTTTAACTGCTAACCACCGCACCGCTGTCTCGATCGGAACAGTTTTCAGTCTTTGATGCGGCGACAGTTCACCCTCAGACAGGTGGAGGTTGCCGGGGCAGAGAGAGGGTCACGGAGAGAAAGACCCCCGGCTCAAACGCAGCCGGAGCCACGACTGTCTGTGGCCCCAACGGCTTTTTAAAGGTGAGACACCGGcctgcccccccctccaccGCTTAATCTGTTCGTGAGGATGTTTGAGTTCTCGGTAGGAAATCGTGGCTTTGAGGCCCTGTTTCTTTGCTCTGGGCCAAAGTCCTTGTCAGTCTTGtgtaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcctgggCAAGCATGTCCTGTCGCTGCTCAAGGTCAGATGGTCAGTGTGCACCGCCTCCGGGAGTCTCGCCTTGGGAATGGGACGAAGCTCTTCACCTCGTCAAACGACAGGCCTGcggggagaggagggagagatgaGTGAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58840 lncRNA upstream 2603 45291273 ~ 45292900 (+) True G47192
TU58838 lncRNA upstream 8650 45286516 ~ 45286853 (+) True G47190
TU58837 lncRNA upstream 11344 45283840 ~ 45284159 (+) True G47189
TU58836 lncRNA upstream 11903 45283392 ~ 45283600 (+) True G47188
TU58834 lncRNA upstream 14408 45279754 ~ 45281095 (+) True G47186
TU58890 lncRNA downstream 271234 45569409 ~ 45574313 (+) True G47232
TU58917 lncRNA downstream 317958 45616133 ~ 45620232 (+) False G47255
TU58920 lncRNA downstream 317958 45616133 ~ 45619070 (+) True G47255
TU58924 lncRNA downstream 324412 45622587 ~ 45622806 (+) True G47258
TU58928 lncRNA downstream 326197 45624372 ~ 45624571 (+) True G47262
AMCG00013838 mRNA upstream 229983 45059096 ~ 45065520 (+) False AMCG00013838
AMCG00013840 mRNA upstream 355342 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013839 mRNA upstream 376242 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013837 mRNA upstream 598732 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013834 mRNA upstream 633865 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013841 mRNA downstream 48432 45346607 ~ 45353929 (+) True AMCG00013841
AMCG00013849 mRNA downstream 121738 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013848 mRNA downstream 144911 45443086 ~ 45456185 (+) True AMCG00013848
AMCG00013851 mRNA downstream 192562 45490737 ~ 45494667 (+) True AMCG00013851
AMCG00013850 mRNA downstream 253798 45551973 ~ 45569316 (+) True AMCG00013850
TU58815 other upstream 199834 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 1854805 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2205860 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2251067 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 2646749 42644987 ~ 42648754 (+) True G46723
TU58857 other downstream 28483 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 518197 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 636484 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1771526 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2949892 48248067 ~ 48249713 (+) False AMCG00013961

Expression Profile