RNA id: TU58920


Basic Information

Item Value
RNA id TU58920
length 2513
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G47255
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45616133 ~ 45620232 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCACCCACAATGCCTTGCAGGAAGTGGCAAGAAACACATACCAGTAAATCCAATATTATGTCATATTTAATGGCAAAATACACAGCCTTCGTACATATGACAGACTGGGAACCATTTCCTCCTTCGTATTGCCAACACAGAGTTCACAGTCCTGCGATTATCAACGATGTTCCGAGccaatgtgtttaattaagacTGGCCgaaattatgaaatatgaaCACTGTGTCAGGAAGTTCGCCAGACGGATGAATCTGCTCCAGTCCGCGCTGCAGTTTGttctgtgaagaaaataaaacgcagattcctctctctatatataacatGATGAGAAATAAAACAGCCGATAAGaggaaatagtttatttataatgaaacacGGATATCGGCGCAGACACACAagcggggcgggggggtgtCTGACGGTGGGGGACATCTGGGGCCACAGCGAGGCGCTTCATCAGACAGTGGCTCTGGCCTGCATGTTCTTGGCCAGCACTTTGAGGTCTGTGATGCACTTGGCGATGCTCTCCTTCTCCTGCTGGGGGGTGATGCTCTTGACCACGCTCTTCTCCACCCAGCTGACCATGTGCTCCTGCGCCAGGCGCCGCTGCAGGTGCTGCATGGCCACCTGGTAGTCCAGGCGCTTCTTCACCTCGTTGGTGACCATGTGCAGCCGCTCCCTGTAGTTGGTCTCCAGCAGCATCGCCACGTTGTTCTGGGGGAGAGACGCACGACAGCGTCAACACAGGAGCGAATCAAACTGCTTCCCGTCTGAGACTGCAGCCTGCCCCACGTGTCCGTCAGATGCGAAAATCCGCCGAGGATTGTTCAGACTTTCGAAAATGACAGCAGGGCATTGGAGGCAGAAAGCTGCATCTCAGGACGATCTTTTATTGGTGTAGGACGGGAATAAagtaagtttattatttcatgtatGTAAATTATTGTGTCTGTGTCATAGATGAGAATTCGGTCCTGCTGTGTTCTGAGGCTCATTTACTTTGATTGCTGTTTTGCACGATCACAGAGGCTTGTAAAGTGTGACTTAGAaattttacaacaaaaaaattatttgaatgcTATGGGCACGTTCCGTTTGTGTCCATAACATTCTAatttttattccatttgttCTAGATTCTTTCCCTCGTGTTCTATTGAAGTTCAGCTATAAATCAGAGTAAGAGTTCTCAACTAATAAATATCACTTTTTGGGAAAACATAcgagtttatttttatgatttttgaTCTCTGAAATACAAATCGAGTCTGAGGATGTAAGGGATGATGAGGATTGATCTGATGTTTATGTCATTTACCATTGTGGAGATTTATGCACTAGAGGTGGACCGATTAATCGGGGCCgataacagctttttgaaaCGGCAAAAATGAACGCCGATAATGGCCATGACTTGGCTCAGCACGCAGACTCTGATGCTCACTTAACAACTTCGGCTGAGAGAAGAGGTGCGCATACGAGTTgtcaaacattgaaaacaaacacaaaaggaagGTACTTTGTTTACAAATGTGGCAGTATTAAAAATAGCTAATTAGCACTGATATTCCGCAAATATTTTAGAGCTTTCAGACAGCAACATTTAACCACTGGATTATTTTTTCTACCAATTAAAAACTCCATTTCCACTGGGATTATATAATTGATTTGATCGGGAAGTacagtaaatattatttatgtccaCTAAGTTGTTTAGTAGTGAAGAATAACTTGATTGTACACTCAGAGCAGTGTGGGCATTTAAATCagggcattacatttttttttttaacatttcaatctTTTCTAATTCAagttatttgtcttttatttgtagattCGTATTTCTGTATATGAACCTGTTcgtttctattatttattttgaattgtatttgtgtgtgtaaatcaaGTGCGTGGATTACAAACATTGATCCTTTGTGTACACTGTGATGCACTACATTATTCCAGAATTGTTTTCTAATGTTTCCTTGCTAATCTGGTTGTAAAATAACAGCAGCCACTGCCTGTATTACTAGTAAATGCGACgtgaaaatctataaataaaagtactaTAATGCGTAGTGCAGTCTcgtgtttatttcatgtttccatctacatgcatttttttgAGAAATAAGGAAGCACTTCTACATGCGCCGTGCCTGAGCCAGTGTGAGCGGCGGGTCAGTCAGGTGAGCAGCAGCTCAGCCCTCAGGCCAACGCTGACCACAGCTCTGAGCCTCTCATCTACACTTTCTACAGCTAGCAGTTatatctgaaaataagtaaagtacCCAACATTTGTTATTACTGGCATTTcatatttgtagtttattttcagcaaTTATCTAAAGAGAGTAATGTTGAATTAATGCTGCAGAATTTTGActtaatttttcatttatttgaatggatctattttatatttattttatactattttTTAGTTCTTACTGTAATTTCTTTTGATAATAAAGTTCATAATATATAGCACTCAAATAATAAATtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58890 lncRNA upstream 41820 45569409 ~ 45574313 (+) True G47232
TU58844 lncRNA upstream 261719 45295503 ~ 45354414 (+) False G47194
TU58842 lncRNA upstream 317958 45295503 ~ 45298175 (+) True G47194
TU58840 lncRNA upstream 323233 45291273 ~ 45292900 (+) True G47192
TU58838 lncRNA upstream 329280 45286516 ~ 45286853 (+) True G47190
TU58924 lncRNA downstream 3517 45622587 ~ 45622806 (+) True G47258
TU58928 lncRNA downstream 5302 45624372 ~ 45624571 (+) True G47262
TU58933 lncRNA downstream 20794 45639864 ~ 45641637 (+) True G47264
TU58990 lncRNA downstream 162956 45782026 ~ 45800423 (+) False G47320
TU58992 lncRNA downstream 162956 45782026 ~ 45800423 (+) True G47320
AMCG00013854 mRNA upstream 13941 45598723 ~ 45602192 (+) True AMCG00013854
AMCG00013850 mRNA upstream 46817 45551973 ~ 45569316 (+) True AMCG00013850
AMCG00013851 mRNA upstream 121466 45490737 ~ 45494667 (+) True AMCG00013851
AMCG00013848 mRNA upstream 159948 45443086 ~ 45456185 (+) True AMCG00013848
AMCG00013849 mRNA upstream 184516 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013853 mRNA downstream 9317 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013855 mRNA downstream 16042 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013852 mRNA downstream 34283 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013862 mRNA downstream 63010 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013863 mRNA downstream 101150 45720220 ~ 45740542 (+) True AMCG00013863
TU58857 other upstream 255251 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 520464 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2175435 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2526490 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2571697 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 197302 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 315589 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1450631 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2628997 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2635224 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile