RNA id: TU58990


Basic Information

Item Value
RNA id TU58990
length 3072
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G47320
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45782026 ~ 45800423 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcctataaATGCACGCATGTCAAACCACACACAACATAAATCCCCCTCTGCTTGTCTTCCCAGACTGTGATGTAATTCCAGTTGTGTTTCCAAAGAGCTGCGCGGgccgtttgttttgtttggggcGAAATGATTCTGGGTTCTCATGCTCTCTCGATCAGCTGCGTgtgcaaaataaacattgcaaGGAGTCTGGGGTAAATTTGCAACTTGTAAAAATTTATTATCTTCTTAAAATGACTTTGTGTAGagtacaaaactgtacatttatctatatatgtacacaatccataaaaaaaaacaaaaaaatgtacattgaatacacattttcttcctcttagCTTAAAacctacaataataattaaaaagagaaaaacagtaaacagaTTAGCTGCTCAACAGCCCCATCCAGAAAGAATACTACACTTAAGATTACACTCCAGCATTGGGATACAAACGTGTCAGTTTGGCGCTAACAAATTTACAACGGCTTACTACCTCACAGCTTATTCAAACAGGCAATGCAGACTTGGAAAGGGAATTCGACAGCCACCACTGTACTTTCAGCTCAAACAGAACGgtttataacccccaacacccACCTCGAAACACAATCCGGTTTTCTTTCAGGGTAAAATTCGGCCCCTGCTTCATGGTCACAGTGCACAAGTTGCAAAGACTCTTGCTGGAAGGCAAACCTTTACAATTTCCATGAAGGAATTGGAGAAAGCGGTTTTGGTGCCACAGTTATAGTGCAGGGGACTGTTCTTTGTATAACCTGGGTCTATTGCACACACGCataccgaaaaaaaaaaaaaaaaaaagatacaaattaaatctgGAAAAGTTATTTGACTTCATTTCATTGCAAAACTCCTACAACACTTGCACGGCTTGGCAGTGATGCTCAATGCTGTGGCTTAGTTAAGGCAGCACTCAGCTTTAAGGCTGTGGAGAACACAGAAGGCAACTGCACAAATTACTGGAAATAGATCTGACCTTCAAAGTTTACAAATACTTCAGCCCAACAATAGAGTAACATTTGCACTTAAAACCGTTTTAAAccagttgtattttgtttttttgttttttggttcaCAAATTAGGACAGGTCcgattttaaaacaagtttcagGGTCTTTGTTTTACAAGCTGTGTATATACGCGTGTAAGGCCACACTGCTAGTGATTTTAAGTGTCGGACGGGACACACCAGAAGTGGCTGCTGTTCAGGAGTTGAGCTTAAAGCTTAACCATGACGTCCAATGCTGCAAGAGTTTTGAAGTCGTTATTGCACCTTTTCAAACAAAAACCAATTCCCCGATTGGGGTTAACCCTAAACCGCCCACCCCAGGTCCCCACAGATATGTTATGcagtgtctatatatatatatatccatagatataaaaatacaagaaaaggcTGAATTCAGTACGGAAAATCTGAGAACAAAGTGAACGTGTACATATACTGAATGCCTTGGCAGTGCAAAGAGCACGGCTGGCCGCCTGAATCAGCCACGCCGCCAGATCTGGGTCTATAGTAGCTACATCTTAATGCAATAGCCCCCTCAACAATACTCCACTGGGCATACTGGGGCCAGAGTgctttagtttcatttttttaagttgctgGTGCTCGAAATACACTCCCCCCACACCCAAAAAGGGAGAGCAAAAGATAAAGAGCCTTGAtgcttaataaataaagtttatgGGGGAGTTAAAGATAAAATTGCAGAAAGTTACACCCAGTTCGAGATACAAGAAAGTAAGGTCGCGGGTCCGAGGCGGCTGTGCTTAGCCTCCCCTCTGCAGCGCATTGCCTGTCCGGTCCTGCCTAACTGGAGACGGTCATCAGGTAGTTCTTGGGGGGGCTTGCGCGGCCCATCAGGTACTGCTTCTTGCATGTGTACATCCCGCTGTAGGAAGTGCTGCTGGCGGCGGGGGCGCTGCTGGGCGCCGGGGCCTCGGCCTCGTACAGGACGCAGATGGAGCCGTCCTCGCCGATGCGGTAGGACACCTCGTACGGGTCGACCCACAGCGTCAGCTCCCGGGGCAGGAGCTCGTACAGCTGCTGGCTGCTCAGTCTGATCCTGCCGGCCACTTTGCTGATGATCGGGTCCATTTCGTGGTTAATCCGAATGCAACGGTAGCCGGATCCCTTCTGGGGCCTGTCGGGGAACCAGTGGTGCCTGTAGTGCTCTGGAGAacagaaatacaacattaatactggaacaataaaatatacagatgtgCATACTGTGGTCTAATGATAATCTAGTAAACCATTACAAATAGACGTTGTATTAAAAGTCTTTACGCGGAGAAAAGGGATACATTGTAATGCAGGTCAGACGCCACAATGTAACGAGTGGCTGTAGCGAGCAGTGCGCAAAGGACACCGGGATTAAAGAGCAGCGACGCCTGCAAAACAGCGCTGACCGCGGGGAGCGGGCGAGCGACAACCGTCACAAGAAAGACGAccaaaacaacaagatggcttcCTCTCTGCGGCTCTTCCGTTAGCACTTCCGCTCGAGACAAGCGGCCAGCGAGCAAAACACAAagccccaacacacacacacacagaccccccaacacacacacacacacagacccccgACACCCCAGCGCCCAGGACCGACCTGCCAGCGCGTCCTGCAGCGAGGCGCTGAAcacctgcagctgctgctcgCTCAGGCAGCCCCGGGTCCGCAGCAGGCTGGTGACGAAGCCCGCCGCCGCCGTCAGCTCGGGGTTCATCTCCGCTTTGGTGCCGCTGCAGCAGTGGCTCATGGTGTCGGCTCGTCCGTTTCAGGCGGGGGTCGGTGGCAGGGTAGCAGTCCCCGTCTCTAGCGAGCGCCTCCACACCGGGGTCCGCCGTGTCTTTAACTGAGAGCAGGCTCTTCCGCCGGGCCGGGAGCTCCTTTTTTTCGCCGCTGGTTCAAAGGTGCATTCTTCGGAGTGGTAGCAAAATAAAGGAGTCCCCCCTCCAAGTACTGATGaccaaaaatacagtatttatacatacatatatatatatatatatatatacacacacacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58933 lncRNA upstream 140389 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 157455 45624372 ~ 45624571 (+) True G47262
TU58924 lncRNA upstream 159220 45622587 ~ 45622806 (+) True G47258
TU58917 lncRNA upstream 161794 45616133 ~ 45620232 (+) False G47255
TU58920 lncRNA upstream 162956 45616133 ~ 45619070 (+) True G47255
TU59012 lncRNA downstream 18528 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 25889 45826312 ~ 45826652 (+) True G47336
TU58997 lncRNA downstream 50672 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA downstream 50672 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA downstream 50672 45851095 ~ 45854769 (+) False G47322
AMCG00013863 mRNA upstream 41484 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013862 mRNA upstream 86998 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013852 mRNA upstream 125654 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013855 mRNA upstream 145457 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013853 mRNA upstream 148550 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013869 mRNA downstream 495 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013872 mRNA downstream 16230 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013871 mRNA downstream 33398 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013870 mRNA downstream 55029 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013868 mRNA downstream 77675 45878098 ~ 45885313 (+) True AMCG00013868
TU58857 other upstream 421144 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 686357 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2341328 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2692383 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2737590 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 15949 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 134236 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1269278 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2447644 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2453871 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile