RNA id: TU58998


Basic Information

Item Value
RNA id TU58998
length 3248
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G47322
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45851095 ~ 45854769 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTCCTCCGCACTCAAGGTGCAGAGACACGATCACGAGAAAAACGAGGATCTGCAGGATGTGAACATGGCATCTTACTGAGTCTTTATCTACTGAACTGCTGAACGGAGAAGAccttttgtaaatgtgtgtgtatatatataatgtgtgtgtgtgtatatatatatatatatatatatatatattttttttttttaagaagaaaaaagtcacGAATAGTATTTCATAttctatatacattttgtaaagaaaacagccttttttctgtctgtgaaaactttctaaatggaaaaatctcatctgaatatgtatatattttttgttttcttgtggcCCGTGGATAGTTGTGACTTCCCTGTCGAACTCAAAGGCTCGATCGGTTCCCTGTGAACTtgaggaaggaaaagaaaaactacaagataggaaatgtaaaatgaagcGATGAGATCTGTGAACAGATCTGCAGAAACCGAGTCGCTTTTTATAAAACCGATTCATCTTCTCAGCTGTTGAGATGGAtgtttgtttagattttcaCAAGGTGGGGGTGGAGTGATGGATGGAAGAGGCCAATcagaaaaaacagaatgagttttgtttacttttctcaCCAAAAAGTACCATCACACATCACAGCAGGATCAAAGAAACGATCGAGGACAGGAAAAGGAAGCGTCCTGGTCAGAGAGGGTCCTGTGAGATCTTGGCTTAGAGTTTGATCCCTGAAGCACCTGTATgatcgtattattattattattttttttttttttttaaaggtgcagAATTTACTAAAACTCGGCCTGGGCGTCTGGGGTTTGAAACAGGTCTGCCATGGGCCGTCACCCCCATGTGTGTCACGGCAGGGGACGGGGTGGGAGGGGTCTCTCTGAGTGACAGCCCTTTAAAACCCCTGAGGTGATATTGTACACATTCTCTGATGCTTTAAAAGCCAATGTGTCCCGTCTGCAGTTTGATCTGCGCTGTGACGTTTCAGAGGGGGTCCtactgaataaatatatacacactcgCACGGACACATATGTACGTAtctatgggtgtgtgtatatgtatatgtacatattagtgtttgtgtgtctttagaTATTGTTGAAATAGTTGTGAATGCAGCAGCACATgcctgtatatgtatatacatatacagaacattttttttgtattttttttatgatactgtgcaaatgtgtgtgtgtgtgtgtatatataatacatgttgatcagattattatttttgtctccGCGTAGTAGGAGCTTTACCAGCAACACAAAACACTTCTCTGATGATGGGATTTCAGTCTTGAAGGTCCTGATCTTTTAGAAATCCCTGGAGTGATTATTTATGCCCCTACCATTAACTGTAGATCCATTGTGATTGGCTCTGCCATTATAGTCAGAATCGGGATTCCTAGCAAGGAACTCTGGAAAGACTTTCTCTTTTGGTCCCTATCCATGTGTGGCTCCTGTAGCTGGCTTTCACTAcgctgtttttgtttatttgtttaagttttttttgcTCAACATCCTCCACTGAAGACCTGGGGGTTCACACGCACTGCTGTGTCTTTCTTGCTTGTAAACTCACCATGCCAAAACCAGCAGAATTAGGTTTCTCATTCCAGCCCCGTGTTGTCTGGTTTCCTAGTGTCGGAGCAGTGGATGCCTTCTGTGAGCAGTTTATCACGGGTGTCAGATCGTGGGGtatatcattgttttaaaatctgaaacaaaatggCCTCCTGTCATCATGTCTGAAGGCAGTCACTTACTTTCACCCTGCCTTTCCAAAGGGCCAAAAacgtgtttttttatgtaaatctatataaaaacaaaaaatagatattttcaaatgaagaaaaaaaagttgcatCAGTCTCCTCTATAACAAGTTCAAGGGaaagatgcattaaaaaaaggttttttttttttataaccacTTCACAACAATAACCCAGTTTCAGATGTGAGgggaaaacataattaaaaataaagcagttggTGTATTGCTATTGCTATACAACGCTATTGCTTTTTGATTCCCTTGACTAGAAACACAATTGTTTGCATTGAAACTGCAGATTGATTCCACACAGTTGGAATGAATGGGTAATTTTCATCCTCCATTCAATAGACTATACAGTACATAtgaatttgcttttttattattatttatttaatgttttctgtataaGGTATCAAACCTTCAGAATATGTTTGTTGAGTTATTTACCTGCTACAAACCCTTTGTCTTCATATTTGACTAAACTACTCCCGACCACAAAAATCCAAAATGACAAAAGTTTTGTGAAAACGTCGCATTTCTCTTGCCATTCACACACCAGGAGGCAGCTGGCCTGGGAAAGTGTACAATTTGGCTTCTACCCATCGCAGCAGATCTGCACTGTATGGCACAGGTCCTATATTCTGAAATCTAGACCTGAATTGAAGAGCATAGTCTGTCCGTCGTGCTCTTGTCCGGTGAAGAAACCCCTTGATCCTCAcctttcagaaaaaataagaatccCTTAGATGTCTAGAAAATGACTGAGGGGAAAATGATTTGCATTGAATTCCTTCTGTCCTTTGCCTGTAAAATGCGTAATGCACTGGTAAATCCACAAGACACTGTATATGAAGTATAAATGGCAATTAATGAGCCAGGACAGGGTACAAGTGTGCCCTTCTCTCTAGTGCAACACTTTAATACATGCTGACAGAGCCAGCACTGAAGTGGAAATGTATTTGGTATATCGCCCCCCCCCAGCAGCACTAACTTGTGAATTACTGTGAAAAGTCTGCTTTGAAAACTCCttgatgtatatttgtgttttatgtttaggTTATAAAATCTCAAGAGTCAGTCACCCCTCACAGAAGGGAaggcatatatttttttgaaaatttctttataaaaaataaaatcaaacctgCGCTTGGGGGTGTAGGGTATCGGGCCATGGTGGTGTTGTGTATTGTAGAGTTAATTacatgttatttgtgttttccagaatcttttaatgtagattttttttttttttgtaagaagaAATTGAACTAtctatattgtttgtttcttttttgggggggaaaagtTTCTAGATGACAAAACTATGAAAAGAATAAAACCAATACATTcttatactgtgtgtgtatatatatatatagatatatatatatatatatatcctctgCCCTAAACTGTACTGTCCATTAGTGCTTAATCAGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59015 lncRNA upstream 24443 45826312 ~ 45826652 (+) True G47336
TU59012 lncRNA upstream 27867 45818951 ~ 45823228 (+) True AMCG00013872
TU58990 lncRNA upstream 50672 45782026 ~ 45800423 (+) False G47320
TU59087 lncRNA downstream 47098 45901867 ~ 45903185 (+) True G47383
TU59091 lncRNA downstream 51333 45906102 ~ 45906399 (+) True G47387
TU59094 lncRNA downstream 66371 45921140 ~ 45921898 (+) True G47390
TU59104 lncRNA downstream 88802 45943571 ~ 45947856 (+) False AMCG00013879
TU59322 lncRNA downstream 441864 46296633 ~ 46302869 (+) True G47546
AMCG00013871 mRNA upstream 4959 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013872 mRNA upstream 29956 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013869 mRNA upstream 48284 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013873 mRNA upstream 52154 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013863 mRNA upstream 110553 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013870 mRNA downstream 683 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013868 mRNA downstream 23329 45878098 ~ 45885313 (+) True AMCG00013868
AMCG00013878 mRNA downstream 34526 45889295 ~ 45893895 (+) True AMCG00013878
AMCG00013881 mRNA downstream 40378 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013879 mRNA downstream 88943 45943712 ~ 45959194 (+) True AMCG00013879
TU59011 other upstream 33140 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 490213 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 755426 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2410397 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2761452 43087289 ~ 43089643 (+) True G46862
TU59106 other downstream 79890 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1214932 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2393298 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2399525 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2413985 48268754 ~ 48269272 (+) True G48018

Expression Profile