RNA id: TU59087


Basic Information

Item Value
RNA id TU59087
length 1319
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G47383
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45901867 ~ 45903185 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGAAACTTAACACATTGATCTGAAAACCACACCAGACTGCACTATTGCTGCCAATCGTTTACTATTTGGAGACGGGGGAGGACATTGCCCAGTCTTTCCCTGAAGACAGTGTGACTGAGGGACAGCAAGAGGCAGGAAGTGTGTCTCTGGGCTGCTTGGTTCTGTCCTTTGAAAGAGCTGATGCGTAAGCATTTGGAGGAGATGTTTTGGGTGTCAACACAGGGTTGGACAGCTTCTCAGCACTATGGCCCTGTTCGATagatcctggtcctggagagccacaggggcTTCTGGCTTTGGTTTTATTCAATCCAGCAGTGACCTAATTAATTCTCTAACTGGGCTTACTGCATCAcagttttcaatgttttcagtGATTTGATGATTTAGAGAGTCCTGTACAGTATAGTGAGAGCTCCAGGAACATGGTGGCTCACGCCTCCGATCTCAGTAGAGGGGTCTGAGCCTGGTTTTAACCTCTAGGTTTCCTTTAAGAGTGACTGAAAGCCCATGATTGCTCCCTCATCAAGTCTTGCACTAGTCTAGTTAACGTCTACTGGGTGTCAGACCTCGTGATCCATCACAAAAGAGATGTCTCCTATTTGTTCCTTCAAAGCAGCAACCAAAGAAGAGTGTTTCCATAATGTGACCGTGCAGAAGGAAGCAGACCAGATTTCAGCTCTGTGTTCTGTTAAAATCAGCCGAGCTCTGAGTGAATGGTGTAAAAGTCGTGGAGGCTTACACATCCTAAgatcaaatgcattgtaaatatCTGTATAACTTTCAAAAGCAAGTAAAATGCCTTTTCAGTTACCCAAGCCTTCTCACCCTAATCAACAGTACACTGAACAAACTGATGCACAGAATTGAAAAAAGCAAGACCAttataatgcaaatgtttgatttttattctaaatgcactaaaaaaaatgtttgctttccaCATTCTTCCGTTTTGGTGTATTTTGGACACGTATAGATTTTAAACCAAATTGTGAAACTTGAAAAGCCCTTGAAGAAAGTATGTGCACTATAATGTATTGccttagtttgttttttaatttctctttgttTATACGGTGAAATGCAGaacatgtaatataatatttatacaatgtatttaaaatgtgtagcGAACAAGggaaatgtgactttttttttgttttgttttgttttttctttggttttgcaTATATACAAGAGTGTGTTGCCAAATAAAACTACTTTTGCGCTGTTTGTATTGTGTCGCTTTGGGGAGGTGAAGACCAGAATAAAATCACAGTCCTGGGGTTGAACTCTGAACTGTGACAAACTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58997 lncRNA upstream 47098 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA upstream 47098 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA upstream 47098 45851095 ~ 45854769 (+) False G47322
TU59015 lncRNA upstream 75215 45826312 ~ 45826652 (+) True G47336
TU59012 lncRNA upstream 78639 45818951 ~ 45823228 (+) True AMCG00013872
TU59091 lncRNA downstream 2917 45906102 ~ 45906399 (+) True G47387
TU59094 lncRNA downstream 17955 45921140 ~ 45921898 (+) True G47390
TU59104 lncRNA downstream 40386 45943571 ~ 45947856 (+) False AMCG00013879
TU59322 lncRNA downstream 393448 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 515947 46419132 ~ 46470471 (+) True G47580
AMCG00013881 mRNA upstream 286 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013878 mRNA upstream 7972 45889295 ~ 45893895 (+) True AMCG00013878
AMCG00013868 mRNA upstream 16554 45878098 ~ 45885313 (+) True AMCG00013868
AMCG00013870 mRNA upstream 24972 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013871 mRNA upstream 55731 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013879 mRNA downstream 40527 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013880 mRNA downstream 73043 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013884 mRNA downstream 90028 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013885 mRNA downstream 134208 46037393 ~ 46047122 (+) True AMCG00013885
AMCG00013895 mRNA downstream 200803 46103988 ~ 46123681 (+) True AMCG00013895
TU59011 other upstream 83912 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 540985 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 806198 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2461169 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2812224 43087289 ~ 43089643 (+) True G46862
TU59106 other downstream 31474 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1166516 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2344882 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2351109 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2365569 48268754 ~ 48269272 (+) True G48018

Expression Profile