RNA id: TU59091


Basic Information

Item Value
RNA id TU59091
length 298
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G47387
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45906102 ~ 45906399 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgatcgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataactttttttaaatgcgtttttctgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatactttttcccctcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59087 lncRNA upstream 2917 45901867 ~ 45903185 (+) True G47383
TU58997 lncRNA upstream 51333 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA upstream 51333 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA upstream 51333 45851095 ~ 45854769 (+) False G47322
TU59015 lncRNA upstream 79450 45826312 ~ 45826652 (+) True G47336
TU59094 lncRNA downstream 14741 45921140 ~ 45921898 (+) True G47390
TU59104 lncRNA downstream 37172 45943571 ~ 45947856 (+) False AMCG00013879
TU59322 lncRNA downstream 390234 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 512733 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 1024068 46930467 ~ 46934777 (+) True G47669
AMCG00013881 mRNA upstream 4521 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013878 mRNA upstream 12207 45889295 ~ 45893895 (+) True AMCG00013878
AMCG00013868 mRNA upstream 20789 45878098 ~ 45885313 (+) True AMCG00013868
AMCG00013870 mRNA upstream 29207 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013871 mRNA upstream 59966 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013879 mRNA downstream 37313 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013880 mRNA downstream 69829 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013884 mRNA downstream 86814 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013885 mRNA downstream 130994 46037393 ~ 46047122 (+) True AMCG00013885
AMCG00013895 mRNA downstream 197589 46103988 ~ 46123681 (+) True AMCG00013895
TU59011 other upstream 88147 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 545220 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 810433 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2465404 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2816459 43087289 ~ 43089643 (+) True G46862
TU59106 other downstream 28260 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1163302 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2341668 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2347895 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2362355 48268754 ~ 48269272 (+) True G48018

Expression Profile