RNA id: TU59479


Basic Information

Item Value
RNA id TU59479
length 4275
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G47669
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46930467 ~ 46934777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTGTTTAGGGAATAAACTGATGTTTTCCGTGGCTGTTGAATTCACGACACAGGAAAAGTCTGAGGCAAGAAAGGTGAATCGAGGTCcaagaaaatgttgtttgtgGAAATATGGCACCATTTATTGAAAGTTACAGCTGAATTTTTCTgccagaaagaaaatatatttcatataaattaaaaaataaataccagacactacataaatacaaaatgtttttttttttgttttttttttacaagacaATTCATTTTCCAAGCATTTTATCTGCTGTGTTCGAACTGATTCATGTTTGGTTTGTAAAGTCAGCGTTACACTAAGAATTTGGTGTATTTAGTCCactgtctttttcattttagtcaAATACCCAAATTTGCTTTCATTTCGACTCTCTTGCGCACAAGATCTTTTTTTCGCCCCATCAATTAGGAATGTCCAAAAAGTCATTTTCATCCACTGCAAACCTACATCGGCCAATCACAATCCTTGCTTTTGCCAGGTGTGCTTTAACATGATTTTATCTCATTCTGCACTTTGTCTATGCACGTGTTGCCCTGAGAGCCAGCTGACCGTCCTGCAGCACCCGTGTGGGGGTTTGTCTATCCAATGGATTGTTGTTCCCTAAATCACTACTGCAGAGAGGCTGTCATCAGCTGGCAGCTGCTAAGGATTCTGGGCTTAGAATCACGCATTATTATTGACATGGCAACACTTTAAAACAGTGGGCCGTCCAGTATGAATTTAGGCTGTTAGTGACTGTGATGTGTGATCGGATATTGCAGGAGTGACTCGCTCAgagttgtgtgtatgtgtcggCCGTGTGAGGCGGTTGTGATCAGTTTTGTGTCGTTCTTTCACAGTTTGAATTGAGGGGTCTGGGTACCGCAGTGAACACAGCAGATACGAGAAATCAATCAGTAGACAGtggatttaaaatacattttctttcgcCACAGGCAATAGAGCGTTTAATGTCAGCTGTCCTATAGAGCTGAGGAGGGCAGGTGTAAAGAAGGCAGACATGACATGAACCAGGGCTAGTAAGAGCTGTCACATTGGgctcaaaaaacaacaaacacaggattaaaatacagcacaacTCGCACAGGAACACACCAAGGCCGCGAGCTGAAGAAAGGCAGGGGaattcatatatacattgatacagaacaaaataaagtcaCTTTccataattgcttaattgatatTGCCCCCCTGTGGATCAGCAGTGTCACTACAACTTGCATAGAGCCTGGCTGGCCGCTTCCCCTCACTGCTGCTCCAGGCAAGTACCTGAGATATCCTTTCATGGATTCGTTTTTCAGTTTTactctgcatttattttgtattaattcccATTATAAACTAACAAACGTGATTCAGAGGGAAATGCAAATAAGTGTGTCCTCGAAAGAGTGAACAATTGGGTCAGTTGGCATAAACACGGCAAGATGGAGGGAAAGACAAAGCAATGCCATATTTTAATTGGCAGGTTTTGAGTATGTTCTCCTAGTATGAGGTTCTGACGGTATGAGCCGGGATCACGAGGTCGCAGTGCTGGTAATCCAGACCAACGATCAAAGACTCAGCTTTATTTCTCATCGGCAATTAAGGTTTTCACCGCGAAAAACAGTCCACTACCTGGAGAACCTGCCGAGCGAAGGACCCAACTGCATCCGGAGGCAAAGACAACCTCTGAGCTTTCAAAACGCAGGGTGTACAAAATAAACGTACAAAAGCAATCTGTATCACCGGACTGAGATTAATTGCAGATTAAACAACCGATACAGTCCAGGTGGGACACGGGCTGAGCGCTCGACATCAAGCCTGTCATTCCTGGGATTATTCTGTCCAAAAGAACTACAACAACAACGCAGAGACAACCCGAAGACAGAACGGTTGTGTACAGCAGGATCAAAGTCAGACTGCTTCTCAACACCCGGTCGAGGATTTGATGTGAACGGAATCATACGTGGATGAAGGCATTGCTGTAACACTGGGGTAAAAAGGAAGCTGTCCAATTGAAAgctgaataaaaacaagaaaacatgtcAGCGCGGGTGGGGGGGGATCTGACAAGGATAGGCAAGATTGTGTAGTAATAGACAAAAGTCCACTCTGCTGCTGAAGGTGATTTTTAACTGGCTGACGGGCTTTTTGTGAATTTATTTCTTCAACAGAGTGATTTAATGCTGCTATAGTTTCTACCAGCATGGGGCAAATCTGTCAGTGGAggaatatgtttgtgtttttattttattgcgcTATAACTAGCCCTGACTCCGTTGCTGTACCGGTAcgaggtgcattgtgggaactgaaacaaaacctgCAAAACTATCAACGTTGGctaacaaaaaaatcacattcacaAAGCTCATTTATAGCAGAATATAATCGAAGAATTACCATTCATCTGGGATTTCTTTTTGGATTTAAAAGAcctatatgtttaaaaaaacaaaaacaaaacaatcactgtaaaaattacaaatacatgaCTCTGTTTCTGGGACGAGGTCATCAGTCCTGAGTGAACAGGATTGGGTTATTGGTTAAATatttccaaatacaaaaaaaggtcacttgaggaataaaataaaaaacaaaaataaaaacgcaaGTCAAATATAATCCGGAGGTTCAACAGTGTACACAAGCCcgcaggttttttttgtttttttttaaacttttttcttttctttttttttttttcttttaaattttttaacacaaaattacatttccagtgctttgggagaaaaaaacaaaaacataaatgctaTTCAAAACagtccaaatatgtatttctagGCATATAAGTTAAAAAACTGGCCACTATGTTAAATTGGCATAGCTTCGCATCCTGCTGATGCTAAAATCATTCAGCACAAGTATCTCAGCACCCAGACCAACCTGATAAAAATCTGACGTCACTGAAGGCCCTGTTTCAGACCAGTCCTACCGAGATCAATCCCTTTTGAGAGGTGTTGTGCCTCCTGGTAATTTTCGGGGGTTTAGTCCTCAGGGCCTTATAAAGATCACACCTTTTTAAGTGTGGCATTTAACCAcagtaataaattaattgtattgacCGTGGATCAATACATGTGGAGTTAGATGGGTGTTTGAAGACCCCTTTTCTCTGGAATGAAGTCCTGAGAATTACCCACCTAATACGTGAGCTCGAGTATTGGGGCAATACTGTCGGTCTGAGAGAGACTCTCTAGCTACCTCGTGAACAGGGGCCTTCGAGCGGCCATCACTTCAGTGGGACGACTCGGGACGACTTCCCTGCTCTTATCggatcacaaacacaaaaagctgccagttgtaaaaaaaaaattaaaactaaaaacgtaaatgtatatttccctCAATTCAGTTTTGAAGCCTTACATTCATTCGCGCCCGACTGCCTGACTGGGAGGCGGTCACGGGGGCGCACAGGAAGGAGCGACTTCTGTGGGAACAGTAAAATCAATCGCTGTTTTCGAGGCGCGATAACAACGGATGAGGCGTTAAAGAAAGTGGGTCTGCTACTGCGGAGGTTGGCGGGCAGTGACGCTGTGTCTGTActgctttggctgtgtgtgtacgagtgtgtgcgtgtgtgtgtgtgtgtgtgtgcatgtgcggtTTCCCTACAGAGGACACTCAAAAGCACACACGGGCacgtaaaaagtaaaaacaaaaacaaacgagTGCAGTCAGTGCTACGGCGGAGAGGGGGTTGGCGGTTCGCAGGGGTGTGCGTGGGGCACGGCGTGGGGGAGTGTCACAGGATGTCGTCCTCCATGCTGAAGCTGCTGCGGCGGCTGCTGTCCACGGACTCCTCGGGGGACATGGCGGACAGCAGCGGGTCGCCCCCCAGCGGGGACAGCGCCTCATCCATGAGCATGAAGCCCAGATCCTTCTTGTTGCCCTCCGGGGAGGTGAAGGACAGGTCGGTGAGCTGGGACAGGGTGTCCGGGTAGCCCACTGCGCTGTCGCACAAGTCCAGTGTCTGCGCAAAGTCAAAGTGCTGGGAGCTGCCCACTGATGGGTACTGCAGCGGCCCTGGCTGGTGGTTCTCCATCGGGTGTTGCTGAGGCGtgtgctgctggtgctgctggggTGGGTGCTGTTGGTGCTGGGGAGGGGGCAGGCCGTCCACGCAGGGCTTCTCCTCGGGGCTGGTCTCCTGCTTCACCAGGGAGTTGAGCAGCTCCGCATGGCCCATCCCGGAGGGGGAGTTGCTGGGAAGGCCGTGCATCCGGGCTTGCATCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59362 lncRNA upstream 459996 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 627598 46296633 ~ 46302869 (+) True G47546
TU59104 lncRNA upstream 982611 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 1008569 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 1024068 45906102 ~ 45906399 (+) True G47387
TU59491 lncRNA downstream 34961 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 40739 46975516 ~ 46976186 (+) True G47684
TU59550 lncRNA downstream 212578 47147355 ~ 47156704 (+) True G47728
TU59597 lncRNA downstream 285142 47219919 ~ 47224080 (+) False AMCG00013927
TU59601 lncRNA downstream 297277 47232054 ~ 47248989 (+) True G47762
AMCG00013912 mRNA upstream 59754 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013911 mRNA upstream 93457 46796042 ~ 46837010 (+) True AMCG00013911
AMCG00013913 mRNA upstream 177810 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013909 mRNA upstream 372516 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013904 mRNA upstream 525782 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013918 mRNA downstream 75515 47010292 ~ 47012262 (+) True AMCG00013918
AMCG00013923 mRNA downstream 91708 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013919 mRNA downstream 102318 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013917 mRNA downstream 143083 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013924 mRNA downstream 188931 47123708 ~ 47132176 (+) True AMCG00013924
TU59106 other upstream 988561 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1112512 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1569585 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1834798 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 3489769 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 134924 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 1313290 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1319517 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1333977 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1346286 48281063 ~ 48351285 (+) True G48026

Expression Profile