RNA id: TU59491


Basic Information

Item Value
RNA id TU59491
length 1662
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G47681
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46969738 ~ 46971538 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaaataaatgcattggcaatcctttaatttgttttgtagcaGTTTAATGTCAgaacacagagagggacaggaaTAGTAGTGAAAGTATAGTATTAAAGTATAATAGTAAATAGTGAAAAGAATTAAGTGCTTTTTTTAACTCACAATTTAAAGTGCAAAGTTCTGCAAAGTTCAATCAGTCAATTGGGTTATATGTTTGCGAACAAGTGTATCCCAtgtaattgctttaattaagcAAACAGTGTAATTAAAGGAGAGATGGGTGTCCTTCATTAAGTTaaactgtatttacatatatcCATCAAGCCCATTCCCTTGGCTGAAGTTTTGCTGGTAACAATAGGAATCTTGTccatccaataataataataataaatatcctgCTACAGATCATGACTCACTAAtcatttgttgtctttttcatgCCTCTCATGGTCATTACATGCCTGCGTCAGTGTGCTGCTTCACAGGAGAGCAGTGCTGTGCTTTTAATCGCTCCCTCGTTTCTGACAGGTGGCAGAAGAGCCCCTTCTACAGCATGACATCATGACAGTCAGGTGTTTCTTTACCAGCAGACAGTGGAAGGCCTGTTCAAATATTTGCTCACTGCACGGCATTCCCTTTCCACACACAGTTTAAGTCACCAGAGTTTATTGATGTACTGCTTAGTGAGTCAGCAAGGCGAACACTTCAGACAATTTGCATAGCAGCCAAGATAATGGTCTTGATAACCTGCAGGGGAATTACTTAACCTTATAGCAGGAAATTGACTACTACTGTATGCATACCTGCTGCCCTCTGTTAAAAGAAACACCAGAGATGTCTCGTGTACAGAACAATATCTAGATACTTagcaaaataaactacagaagttaataatacatatttaactttGGCACAAGAACTGTCAATTTAATAATCTGTCCAAATGTCAACAAGCAATCCTAACATGGCTGTTTGTCCCAGTGCATCTTGCTAACAAATGCAGGAGACTTCATCGTGCAAACGTTGGCTCTGACTTTATTTATACTAGTGCATGCTTATCTATAAAGCTAGTAGATTACAGCATTGCCTTCTTATCACCTGCAATGTGTGTGTAACACCACAAGAGGTCGCTTTCAGCACAGCATTGGATGCAGGCAGGACACCTCATCAGAAGCACGACTCCTGTGAGAAGCATGCCAGCTGCGGTGCACTTGTTCTACTGAAAACATGATTATTGTGTCTGGAGTCGTGTTTGTGAAGTGCGCTGTTTATAAAGCACACTGTCAAACTGCTGCAGCCTCCGCCTTAGCAAGGTAAGAGGGATGGATCAGTCCGAAAAGCCATTACCACAGATGATTCAGATAATCTAAACGCAGTTTTGAGGGACACACTTTTTTCCTACAAGCTTCTAGGTACCCCCAGGCAGTTCTTAAATAATGAGGTTCTGGTCAATGTCCACTCCAGCAGCCTAGAACGCGATGGACGAGTATTCCACCGAGTATTCTGAGGGTTCGGGGGTCCGACTGGGCTGGATGTTGGCATATCTGGGCTCCTCAGAGAGACCCCGAGGACGAGGTGTCAGAACTGCGTAGATTATGTCCGTGGTCCCATCCTCGCCTCCTCCGGGGGACTGTGAAGCAATCATGAATAAGGAAGGTCATGACACAGAACTTTC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59479 lncRNA upstream 34961 46930467 ~ 46934777 (+) True G47669
TU59362 lncRNA upstream 499267 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 666869 46296633 ~ 46302869 (+) True G47546
TU59104 lncRNA upstream 1021882 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 1047840 45921140 ~ 45921898 (+) True G47390
TU59494 lncRNA downstream 3978 46975516 ~ 46976186 (+) True G47684
TU59550 lncRNA downstream 175817 47147355 ~ 47156704 (+) True G47728
TU59597 lncRNA downstream 248381 47219919 ~ 47224080 (+) False AMCG00013927
TU59601 lncRNA downstream 260516 47232054 ~ 47248989 (+) True G47762
TU59611 lncRNA downstream 284959 47256497 ~ 47258758 (+) True G47767
AMCG00013912 mRNA upstream 99025 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013911 mRNA upstream 132728 46796042 ~ 46837010 (+) True AMCG00013911
AMCG00013913 mRNA upstream 217081 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013909 mRNA upstream 411787 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013904 mRNA upstream 565053 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013918 mRNA downstream 38754 47010292 ~ 47012262 (+) True AMCG00013918
AMCG00013923 mRNA downstream 54947 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013919 mRNA downstream 65557 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013917 mRNA downstream 106322 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013924 mRNA downstream 152170 47123708 ~ 47132176 (+) True AMCG00013924
TU59106 other upstream 1027832 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1151783 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1608856 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1874069 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 3529040 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 98163 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 1276529 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1282756 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1297216 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1309525 48281063 ~ 48351285 (+) True G48026

Expression Profile