RNA id: TU59550


Basic Information

Item Value
RNA id TU59550
length 4567
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G47728
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47147355 ~ 47156704 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAACATggatatacatacatgaaatttACATCTTAAGTTACCATCACAAATAAATGTCCGTGTCTGTATTTACAGCAAAATGTATAGCTTTCCCATTTTTGCATTTGGGTTCTGTCTGGAGTTTAAAACCAGAACAAAAccgaacaaacaaaaaaaacaaaaaacagaacagaataaaaaaccgaaaaacattgtatatttatgCTCAGTATTTCTCAGCGTGGTCTTTGTGTGTTGGTTCCCTGTGCGTAAGTCCAGCAGTCTCAGGCTCGAGTCCATTAGGTAAACTGGTCAGTGACCACAGTGACCGGAGGGAGACTGTCTGCTCTGTGGGGCTGAATCAGACCTTAAAACACCAGTACCTTACTCTCAAGCAGGGATTTCACACAGAGGTCTAAACAGCAGGAACCGGCTGTAGGAAAAACAACCCACGGATTCAGGCTGAAGACTGGGGGGCACCCAGGACCTCAACTAAGCAGAAAGACTTCTAAGACAACttgcttcctcctcctcccgttTATTAAATGCTATTAACGCCCACTTCTGTAACACAACCAGTTCATACAGGTCGGTTTGTGAAGGCAACAGTTGTCTTCTCTGGCTAGCAGTAACTCTGCATTCCTGTTAATGTGCATTTTCTGTTGTAGTCCTAATGGCTTTGTGGCCAACCATGCTCTGTACTTGGATTTACACATGGTTTCATTCAAAAAAGCagctttaaaaattaattacattattggccaaatatgtaattataacAACAGTGGATTGtattaaaacagcaacaacaacaaaagctgcATCCAAACTACTTTCAAAGCAGGTTACTCCTCCAGTCCCCCCCCCCTGCACTGGATATGAAATTTGATATCCTCTACAAAACCCATAGAGGGTGCTGTCTCCCACACATCACAAGACCACGGCACAGGACTGTCAAGATCTAAAGCTGTCTTTCAGTTTACAGTTACACAAGACCATTATTTCCtcataaacactttaaaaacattttagtagagcgacattaaaaaaaaaagaataacagaAAAAGATACTAAATACACCTTAACAAGGATTCAAAGCTACAAGAGGTCCAGCCTGTGAGGAAGCTGTGTGGAAACGCTGATAATGCATCTCACCTGCCTGAATAGTGCAGTGTGTCACCTGCTCTCTCCCGCTCGGCCTGCCAATTGTGTTTGTACCGATTTCCACATGAAGAAACTTATACTGAAGAGTAATCCAGGAAAAATGCTTGCCTTTGTATCCTAGAAAGCCATTTGTCTGAGCCTGTCGTCAGGAAAAACAGCACCTTAAAATCACACACTTATGGCACACCCTACTTCTGGTAACACTAGACCTGACACTGTTATATAATCTGGCCAATTTAATCTGTGCTCTGATCAAAATATGTTCattgtaactgtgtgtgtgtgtgtgtacagatgGCTTATCCCCGCTGCGTGTGTCTAAAGAGAGATGCATTACTGTGTGCATGTTGCGAGTCCTCAATTTCTGCACTCTCTGAACCTCCCAGCTAAGTGTGAAGTCTGCGGTTCAGCAGGTCTGCAGCCGCTCAGATGCACTCCAGAGATGAGCGTTCACATCAACAAGAAAGACTTAATAAAACAGCCATgaattgtaacattttatttatatatgcaaacaTATTTATAGATCTTAAAGAAAGAGgtggacagacaggcagacagacagaggtaTGCACATCTGGTTTGCACATTTgtatgtgcgtgcgtgtgtgtgcgtgtgcgcgctCACTACTGCTGAAAAAACGTTACTTAGTCCGGGGATGGTTTTGTTGGGGAAATGCAGGATCGAGTCTCTGACCTCCAATGCTCCTCCGATGCCGGATGGAAGTGACACTGGTGTGAGAAGGGAAGCAGGTTCTACGAACACCGGCAGCTGCGTTGACCTGTGGGACTCCGggctccctctgtctgtctctctctcaactcTACAGCAGGCTGGGATGAcaccctccctcccccctcaaCACAAACTCCATCTCCTATCCTTCCCAAGCACAACCCCCCCACAAAGCAAACAATAAGAACGGCAATAACATCAACGACGCACAACACAGCCATCTGCAGTCCACTCTGGGCAATGCAAGGTTCAGGAGGTAGTATTTAGAAGCGAACAAgaatttgctttgttgttgtcgCTGTTCCAGTAGCCGAGCGCTTTTCCAGGCCAACCGACCAGCTGAACGAGGGAGTGGGACCTGGGGGTTAAGACCTACAAAGGGCGTTACCAGTACAGCTACGGCCAGATGTTTTTCATCAgacttctctccctcctttttgTACCGCTTCCGGTACCCAACCAAGCTCTCGGTCATCTCCGATTGAAATGCGTTTTTGTTCGGTTTTGTTTCTCCAGTTTGCTGAGCTGCACAGCCAGGGGATTTCACTGTACcagcacaaaaaaatatattgaactggaaatgcactgaaataaaacGGAATCCCCAGAGGTGCAACCACCTTACATGATCGAATCTCGCAAATTAGGACTTGTGAAATTACGAATATGGTGAATTTGCAGGGACAAAaccaaacagcagcagcagagatgGGACGCACTGCAGGACCGGCACTGGGATTTAGGAGTACTGATGAGTACTACACCGGTGTACCCTGACTGCGCCGGCGCTCTGGACCCGAGGACTGCGCCTCCCTAAGCAACACACGTGTATTCGTATGATTCTCTCACTCCTCTGCCTGGATGAAGGTGCATAGTTAGTTATTCGATTTAAGGCCTTTCCGAGTTTCCCTCTTTGTGTGATCTTTGATTCAGCCCGTTTCTTCAAACAGAAAACgaagacaaacaacaacaaccaaccAAAGAAATACTCTTATGTACACGTTGATTAAAatcaaggaaaaacaaaggacactgttaaaaacaacaactgtgaaACGTCACCACCTAGCAGTCCTGTACGTCAGAAGCTGCTCTATCGAAGGCAGACACTCGTGCTCTGTAGGTTTCTGTAGAGGTTGTCAACGCCAGTTCTGCACCTCATCAGATAAACAAATCACATGCATGACGCTTAATCATGTATTACCTAAAGCACTGGGACAAACCCCTTCTGGGACAGTGACCGATTGCACCTGCTGGGTTTTGAGCAGGGCACCGTCACGACCAGTAAGCACTGGGATAGTTTAGGCGAGTGCTGATGGGAGAACTATGGTGCGGCGCATGCATCTACAAGCACCACATCACTGGCCGTGCCACAtcatgaatgtgaatgtgaacacAAGGGAGCCTGGTCACAGGATGCCACTGGAGAGACCAGGAACTCCGACGTCCTCTCGCTGCACTGCTGGACAGGAAGTTGGTCTACATTGCTGCTCCGGCTAGAGGGACTGCAGCAGGCGGAGGGAGGCAAACTCATGGTGAAcggacatttatttttgtcccaATGCTTTTGGTATTATAGCGTCCAGCCATTTGCTTTGAATTGGGGGGTGCGTCCCCTCTGCTCGAGAGGACAGACTGCCTGATCGATCATCACGAGGACAAAAACATTGACTCATTATTACAAGAGCATTTTTCCAAAAACACTTGACTTGTCTAGTTGGGCTTCTATGATTCTTCTATACAAAGGcataacaaaattatatatatatatatatatatatatatatataaataaaaaaaaaacaaattgtcactaaatactaaataaataaatagagcatAAATAAACAGAGCTGCTTAGACAAAGTGCTTTCTGTCTGGGTCTGGCTGAACCACTTCCTGTTACGAAGGAGTCTGGAAAGCACCGGTCACGGGTGACCACACGGCGACCGGGACTCTCGCCGACACCCGCTACACTTTTCAGAGTGAGAGGGAAGACCCCACACAGAGCAACGATGGGCAGTGGAAGCCCAACTTAGATAAACTGAACTATGTTgggttttttggtttggttttaaaacacactcGGGGGGggaaaaattaatacaattaaaataaaaaacctccCAGGAAACACAAAATTGATGCTAAAGAATTTGTATTAAGTGCAGGTTTCTGTTGAcctattatatacatatatttctaaatgtaataGCTCACCCAATACTAGTGTGACAGCATGGGGTTcaggatttaaaaacagaaacaaagaaacaaacacaaacaaaattaaaaccgaTGCTCAGTCTTGTCCTTTGGAGACGTGGCATGAGGCGATGCCCACCCCAGGGGGTCCTCCTTCCGCCaccttgacctctgacctctgacctctgacctacTCTCAGTCGGTGAGTACTACCAGCTCTCCCTCGCTGCGGTCCCCCGGGTCGCTGTCCTCGCCCTCGCTATAGGGAAGTCTCTCTGCCGGGGGCGGCGGGGGCGGCCCACTGTCTCCCTCTTTGGGCTGGGAGGTGTGGGGCTCCAGGGCGCGGGGCAGGTATCTCTCCAGCAGGGCGGGGTTCAGGGGCTGGGAGGCCTCCTGCAGGAGATGCAcaattgtttaatcatttatttaagatTATTCTCTCAAGgtgttgtgtgtgcttgttttgcCTGGCCTTGG

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59494 lncRNA upstream 171169 46975516 ~ 46976186 (+) True G47684
TU59491 lncRNA upstream 175817 46969738 ~ 46971538 (+) True G47681
TU59479 lncRNA upstream 212578 46930467 ~ 46934777 (+) True G47669
TU59362 lncRNA upstream 676884 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 844486 46296633 ~ 46302869 (+) True G47546
TU59597 lncRNA downstream 63215 47219919 ~ 47224080 (+) False AMCG00013927
TU59601 lncRNA downstream 75350 47232054 ~ 47248989 (+) True G47762
TU59611 lncRNA downstream 99793 47256497 ~ 47258758 (+) True G47767
TU59645 lncRNA downstream 249912 47406616 ~ 47407552 (+) True G47791
TU59652 lncRNA downstream 264312 47421016 ~ 47421229 (+) True G47797
AMCG00013924 mRNA upstream 15179 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013917 mRNA upstream 62317 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013919 mRNA upstream 73647 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013923 mRNA upstream 120381 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013918 mRNA upstream 135093 47010292 ~ 47012262 (+) True AMCG00013918
AMCG00013927 mRNA downstream 65377 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013939 mRNA downstream 384529 47541233 ~ 47543434 (+) True AMCG00013939
AMCG00013941 mRNA downstream 567730 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013943 mRNA downstream 637235 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013953 mRNA downstream 929255 48085959 ~ 48097083 (+) True AMCG00013953
TU59522 other upstream 73647 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 1205449 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1329400 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1786473 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 2051686 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 1091363 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1097590 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1112050 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1124359 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 1385238 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile