RNA id: TU59659


Basic Information

Item Value
RNA id TU59659
length 400
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G47804
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47545192 ~ 47545591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaaaatgctGCCTGGGAGGGTCACATCAACCAAACAGGACTGAACACGGTTTAATCAGCCAATGGGTGAGATAGGCAGGGTGCATCACCCAATCAGATGAGGTTATCGGGATCTGCTTGACCACTAATTTCTCAGCGAAGTGGTTCCTGTTTTGTAAGAAGGTTGAGTTGACGAGGTGTCCCTGCTTTCTTTCgagttttgtaaattaaatggtCAGTGTGTCTCCTAATTTCAATagacctctctttctctctccctaccCAGGTTTTTTACCTACAACTGTACATAACATTCTGGATTTCCTACTCCGTGTTCTGCTCTTATTTCGATGATGATTTAGATGACGATTGTGTGTTAAATTCTATTTTGAgctattattaaaacattttggacTGAAA

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59652 lncRNA upstream 123963 47421016 ~ 47421229 (+) True G47797
TU59645 lncRNA upstream 137640 47406616 ~ 47407552 (+) True G47791
TU59611 lncRNA upstream 286434 47256497 ~ 47258758 (+) True G47767
TU59601 lncRNA upstream 296203 47232054 ~ 47248989 (+) True G47762
TU59597 lncRNA upstream 321112 47219919 ~ 47224080 (+) False AMCG00013927
TU59667 lncRNA downstream 6568 47552159 ~ 47583902 (+) True G47810
TU59724 lncRNA downstream 206623 47752214 ~ 47819593 (+) False AMCG00013943
TU59832 lncRNA downstream 513142 48058733 ~ 48059592 (+) True G47936
TU59833 lncRNA downstream 514324 48059915 ~ 48060814 (+) True G47937
TU59854 lncRNA downstream 616620 48162211 ~ 48162427 (+) True G47958
AMCG00013939 mRNA upstream 1758 47541233 ~ 47543434 (+) True AMCG00013939
AMCG00013927 mRNA upstream 317223 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013924 mRNA upstream 413016 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013917 mRNA upstream 460154 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013919 mRNA upstream 471484 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013941 mRNA downstream 178843 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013943 mRNA downstream 248348 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013953 mRNA downstream 540368 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013952 mRNA downstream 554085 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013951 mRNA downstream 599807 48145398 ~ 48158245 (+) True AMCG00013951
TU59522 other upstream 471484 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 1603286 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1727237 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2184310 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 2449523 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 702476 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 708703 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 723163 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 735472 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 996351 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU123257 True 8256 lncRNA 0.42 5 NC_056709.1 19993794 ~ 20007531 (-)
mexican tetra (Astyanax mexicanus) TU123257 True 341 lncRNA 0.43 1 NC_035906.1 17677865 ~ 17678205 (+)