RNA id: TU59662


Basic Information

Item Value
RNA id TU59662
length 274
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G47807
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47495411 ~ 47495684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCattccctctcctctcttcacctctcctggattttgttttgctcgGTTCTGGATTTAAATTCTGCCCCTCGCCTCTCCACAGCAGAATATCACCACATCTCCCAGTCTTTCACACAGAtcgccccccccccaaaaagaaacaaatcctTTTATTTCTGACAGTGTAGGCGACTTGAGGATAGAtctttctgcctctctccctctgtctccctctctcttgctctctctctctctctctctctctctctgctgttaCTGTCAGTGGCTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59609 lncRNA downstream 268157 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 374810 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 420383 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 656647 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 1192711 46299161 ~ 46302700 (-) True AMCG00013903
TU59664 lncRNA upstream 44879 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 194161 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 471741 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 520877 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 683583 48179267 ~ 48179685 (-) True G47991
AMCG00013935 mRNA downstream 63932 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013936 mRNA downstream 79029 47410368 ~ 47416382 (-) True AMCG00013936
AMCG00013934 mRNA downstream 127349 47323711 ~ 47368062 (-) True AMCG00013934
AMCG00013933 mRNA downstream 205370 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013931 mRNA downstream 220582 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013938 mRNA upstream 56450 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013937 mRNA upstream 71419 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013940 mRNA upstream 87901 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013942 mRNA upstream 213529 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013944 mRNA upstream 353595 47849279 ~ 47857162 (-) True AMCG00013944
TU59572 other downstream 294514 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 620041 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1331924 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1411869 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1521100 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 369166 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 471741 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1322299 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1322299 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1322299 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile