RNA id: TU59884


Basic Information

Item Value
RNA id TU59884
length 2273
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G47981
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48202526 ~ 48204819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATCAAAAACAGTGGCaggaaaagcaaattaaaataaaaaagcctggCGCAAGGGATTGAACTTGAACAACAAAACAGTCAATATACCGGTGCTGAGCGAGCACGGCTTATGCCCAACCCTAAAGCCACAACACACACCGGTCTGAGGACAACCTCGGAGCTCACGGGCGTCTCGACACTAAGCCAGGAAGAGGAagttcacacacagacagacagacaaaaggGACACTCGGGTCAGTACCAGCTCAGGCCTGACTGGCCCTCTGCCCCAGGATTTCGATACACAATCGGCACAGGGCTCTCCTGCCACGTGtagcataataaaaataagtcacTATCGCAgctctacatttatttatttctttaatgtttttatttaaacacctTTCAGGGATTAACCATTTCTGAGCTCGGTTTTATTGCAAAGACAATGAAgactaaagaaaaacaacattgccAACTATGcatgacagagagagatgcacgCTGTAACACACTGGCTTTATAGCAtctccccgccccccccccagttCAGATATATAGGTGGGGATGGGcaggaataattaaaaaaataaaataaatgatgcaatATACATTGAGATTcaacaatacacattttgaaagttccatcagaagaaacaaaaaaaacagcttacATGTCAAAGTTTCAAAAGAATATTTCCTGaCCCcgtgtggaaaaacaaaacaaggttgTTAACCGTTAGGTCCAGGTGTTTAAGCTCAGTGGTTTGGCAAATTAAATCCCACTTCCTTCAAACACTCGGACCTGGCACTGGCCAAGCGTGGGCTTGGACTGGGCTCGCTAATGCCGTAGGAGCGCAGCAGAGCAGAGCGCTGTCCGGCTTCACCGGAGAAGGATAGTGTTATACAAGGGGCTTCAACCAAGCAGGGGTCGAGAGCACAGCCGGGGACCCAGAGAGGAGCGGCCCGACTCCCCCCCGTCTGTAACAACACCCCGGACTCGATCACAGGACAGGCGCGGCCGGGTTACATTCACAGGAGTAcatctaacacacacactcacactcacactcacacactcactcacacctGGGCGGCACGGCTTTCACACTCAGAGCTGCACAGCACCGTCACTCGAGCGCCGGGCCGAACCTGACTGGGCCGATCGGGCTGGAATCCGTGTGGATTAATTAGCAGCTGGCAAATAAAACCAGGGGGCGTGATCGTCAGATAATCAGGTttttaaaggtttgtttttAGCGTTCATTGGCAGGTTCTCACAGCATGCAGAACTGGTCTTCGGTTAAAAGATACATGATAATAAGATTGGAAAGAAAGTTTAAAGTAATGAGATGGAAAAACACAGGGGACCTCACTCGTATGCAAGACGACTTGGGAACCTGTAAGTGGGTCCGAACTTCACGAATACTAGTTTTGTGTAGCTCTGGTCGCTCTACAGAAAATACTAGCTGGTGCTCAGGGTCCTACAGTGCCCCCCAGTAACGGCCTCCTGTGCATCTCCTGCTGACTGAACAACTCGTGACATTGGGGATTAAAAGTGATAtagaagcaaacaaaacaaatcaaccaGGACTAAGTTCATGCACCTGCATTGGTAAGATCTGCCCAGTTCAGtctcccacacacactctctctcacacagtgaAAGTCCTTTGAGATATGGTATTTACAAGCAAAACCgaaagaaaaagcacagatttaaaaacaaactgtccaAACCATTGAGCCAGGCTGACATcggaggggggggaggggaggagaatAGGAGGGGAAAAACGGGGGGaaacgaaaagaaaaaaggacGAGAGAGACTCCCACTGCAGCAGGGTTAGTCCTCCCCAGAAGGAGCTTCCTCTTCCgactcctcctcttcctcctcggCAGCTTCTTCCGCTTTCTTTGGGGGAGGGgactccttctccttcttcttcttctccaccaccacctcgggctcctcctcttcttcctcctcctcctcctcctcctcggggGGGCTCTccggctcctcctcctctttggAGGAGTAGGACTTCTCCGAGGCCTTAGCCGCGCTGGGCCtgcccttgcccttgcccttCATGGGGCTGGGGATCACTGCAGGACAGGGAGCGGGGGTTAGCGGACATACAAGATGCTGACTGAAAGGGGGACACAATGTATACAGAACAAAATCCCGTTGAGAGCAAACACGCGAGCAGGACCACAGGCACCCGGGCAGGAAAAACGGTTTCAGAACCAATTAGCACCACTCGATTTAAGATGCAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59883 lncRNA upstream 83 48200626 ~ 48202443 (+) True G47980
TU59880 lncRNA upstream 1271 48200626 ~ 48201255 (+) False G47980
TU59870 lncRNA upstream 22805 48179191 ~ 48179721 (+) True G47972
TU59857 lncRNA upstream 32886 48168639 ~ 48169640 (+) True G47961
TU59856 lncRNA upstream 37490 48164795 ~ 48165036 (+) True G47960
TU59886 lncRNA downstream 1430 48206249 ~ 48206703 (+) True G47983
TU59921 lncRNA downstream 47960 48252779 ~ 48253145 (+) True G48007
TU59962 lncRNA downstream 129738 48334557 ~ 48346350 (+) True G48030
TU59964 lncRNA downstream 129738 48334557 ~ 48335268 (+) False G48030
TU60007 lncRNA downstream 181371 48386190 ~ 48386491 (+) True G48055
AMCG00013951 mRNA upstream 44281 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013952 mRNA upstream 58609 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013953 mRNA upstream 105443 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013943 mRNA upstream 382803 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013941 mRNA upstream 472252 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013960 mRNA downstream 22596 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013962 mRNA downstream 31944 48236763 ~ 48239245 (+) True AMCG00013962
AMCG00013961 mRNA downstream 34881 48239700 ~ 48258433 (+) True AMCG00013961
AMCG00013963 mRNA downstream 213438 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013969 mRNA downstream 285725 48490544 ~ 48494312 (+) True AMCG00013969
TU59522 other upstream 1128818 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 2260620 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 2384571 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2841644 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 3106857 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 43248 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 49475 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 63935 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 76244 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 337123 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile