RNA id: TU59896


Basic Information

Item Value
RNA id TU59896
length 229
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G47991
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48179267 ~ 48179685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtcagtgcgtgtgagtgtgtgtcagtgcgtgtgagtgtgttgtgtgagttgtgtgttgagtgtgtgtgtttgtcagtttgtgtgtgtgtgtgtgtgtgtgtgtcagtgcgtgtgagtgtgttgtgtgagttagttgtgtgtgattgtgagtgtgtgtcagtttgtgtttgtgtgtgtgtgtgtgagttagttgtgtgtgtgattgtgagtgtgtgtcagtttgtg

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59811 lncRNA downstream 162429 48016561 ~ 48016838 (-) True G47917
TU59780 lncRNA downstream 204352 47967425 ~ 47974915 (-) False G47896
TU59711 lncRNA downstream 484373 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 633676 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 683583 47495411 ~ 47495684 (-) True G47807
TU59908 lncRNA upstream 36190 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 89659 48269344 ~ 48270564 (-) True G48021
TU59940 lncRNA upstream 97051 48276736 ~ 48277321 (-) True G48025
TU59981 lncRNA upstream 128879 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA upstream 150033 48329718 ~ 48339610 (-) True G48047
AMCG00013954 mRNA downstream 2286 48173372 ~ 48176981 (-) True AMCG00013954
AMCG00013955 mRNA downstream 13605 48160674 ~ 48165662 (-) True AMCG00013955
AMCG00013948 mRNA downstream 131201 48031392 ~ 48048066 (-) True AMCG00013948
AMCG00013950 mRNA downstream 154935 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013949 mRNA downstream 165016 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013956 mRNA upstream 210 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013958 mRNA upstream 6602 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013957 mRNA upstream 22894 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013959 mRNA upstream 40547 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013965 mRNA upstream 81662 48261347 ~ 48264373 (-) True AMCG00013965
TU59777 other downstream 204352 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 310404 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 978370 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1303897 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2015780 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 638298 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 638298 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 638298 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1304815 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1315042 49494727 ~ 49498630 (-) True G48392

Expression Profile