RNA id: TU59936


Basic Information

Item Value
RNA id TU59936
length 1221
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G48021
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48269344 ~ 48270564 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGACGTGAGAGCACATAAATGCTAACAatgaagggagagggagcataggggaagtCAAAAGAAACAATGCAAGTGCTATTAaggcaaaggcaagagtatgacaaaacattgtatgagtgcaatcttacaggagaatgaaataCTAAATACAAGTACAGTGTGAAaagatgtcttgagtaattgccagaaggaggtcagggacctgtcttgacttcagtgggaaggtcgttccaccacttagggttcagggatgagaaggagcggctctggaggaaggagagtggagaggaggcagagttagtttTCTgacaccggaagaccgcagcggtctggatgggatgtatggagagacgagtgactgaaggtatcttggtgcagtgtggtcgacacagtggtaggtgagggtcaatgtcttgaactgaatgcgtgccgctatcgggagccagtggagggagcggagcagtggagtagtgtgtgcgaatcggggcagagagacaccagacgagccgcagagttctggatgagctggagcggcaggtagtagatgcaggcaggccggccaggagggagttgcagtagtccaggcgggagaggaccagtgactggacgagcagctgagtcgagtagtcggtgaggaagggacggatccgacatatgttgctcaggaagaatctgcaggtgcgtgtcagagtggtgatgtgctgtgagtaggagagcacaggatcgaagGTGACTcttagatttttagcggaagaagaaggagagagtgtggtggattccaaggggattgagatggagagatcagcagaaggtgaggaagagtgggggagaaacaggagatccgatttggagaggttgagcttgaggtggtgcgagtgtatccaggcggagataacagacaaacaggaagagatgcgagaggggatgagagggtcagaagagggaaaagacaggaagatctgggcatcatctgcatagaagtgggaTGCAAAGAGAGGGCCCAGGGAaggagtgtagagagagaacaggagcggggccaggacagagccttggggtacacctgtgaggagatgCTTgcgggtggatgaggaacctcgccatgtcacttggtaggtctggtcgctgaggtaggaggagaaccaggtgagagcagtcccagagattccaaggtcagcgaggcaggagaggaggatggagtgatcgatggtgtcaaatgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59908 lncRNA downstream 53135 48215875 ~ 48216209 (-) True G47995
TU59896 lncRNA downstream 89659 48179267 ~ 48179685 (-) True G47991
TU59811 lncRNA downstream 252506 48016561 ~ 48016838 (-) True G47917
TU59780 lncRNA downstream 294429 47967425 ~ 47974915 (-) False G47896
TU59711 lncRNA downstream 574450 47689845 ~ 47694894 (-) True G47839
TU59940 lncRNA upstream 6172 48276736 ~ 48277321 (-) True G48025
TU59981 lncRNA upstream 38000 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA upstream 59154 48329718 ~ 48339610 (-) True G48047
TU60003 lncRNA upstream 95495 48366059 ~ 48368369 (-) False AMCG00013964
TU60036 lncRNA upstream 190962 48461526 ~ 48498711 (-) True G48082
AMCG00013965 mRNA downstream 4971 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 42233 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 57316 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013958 mRNA downstream 80042 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013956 mRNA downstream 88767 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013964 mRNA upstream 95479 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013966 mRNA upstream 158339 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013967 mRNA upstream 185339 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013972 mRNA upstream 246369 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 251986 48522550 ~ 48524089 (-) True AMCG00013973
TU59777 other downstream 294429 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 400481 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1068447 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1393974 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2105857 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 547419 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 547419 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 547419 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1213936 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1224163 49494727 ~ 49498630 (-) True G48392

Expression Profile