RNA id: TU60007


Basic Information

Item Value
RNA id TU60007
length 302
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G48055
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48386190 ~ 48386491 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggaggg

Function

GO:

id name namespace
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59962 lncRNA upstream 39840 48334557 ~ 48346350 (+) True G48030
TU59964 lncRNA upstream 50922 48334557 ~ 48335268 (+) False G48030
TU59921 lncRNA upstream 133045 48252779 ~ 48253145 (+) True G48007
TU59886 lncRNA upstream 179487 48206249 ~ 48206703 (+) True G47983
TU59884 lncRNA upstream 181371 48202526 ~ 48204819 (+) True G47981
TU60012 lncRNA downstream 19112 48405603 ~ 48405818 (+) True G48060
TU60014 lncRNA downstream 20992 48407483 ~ 48408809 (+) True G48062
TU60026 lncRNA downstream 69430 48455921 ~ 48456880 (+) True G48073
TU60027 lncRNA downstream 85889 48472380 ~ 48475448 (+) True G48074
TU60028 lncRNA downstream 106554 48493045 ~ 48494039 (+) True G48075
AMCG00013961 mRNA upstream 127757 48239700 ~ 48258433 (+) True AMCG00013961
AMCG00013962 mRNA upstream 146945 48236763 ~ 48239245 (+) True AMCG00013962
AMCG00013960 mRNA upstream 151963 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013951 mRNA upstream 227945 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013952 mRNA upstream 242273 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013963 mRNA downstream 31766 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013969 mRNA downstream 104053 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013970 mRNA downstream 116678 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013971 mRNA downstream 147395 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013968 mRNA downstream 160763 48547254 ~ 48572929 (+) True AMCG00013968
TU59942 other upstream 34905 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 116918 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 130369 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 136477 48248067 ~ 48249713 (+) False AMCG00013961
TU59522 other upstream 1312482 47069701 ~ 47073708 (+) False AMCG00013919
TU60059 other downstream 155451 48541942 ~ 48545128 (+) False AMCG00013971
TU60104 other downstream 368462 48754953 ~ 48760712 (+) False G48142
TU60105 other downstream 368462 48754953 ~ 48760712 (+) True G48142
TU60116 other downstream 390006 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 434759 48821250 ~ 48826055 (+) False AMCG00013985

Expression Profile