RNA id: TU60041


Basic Information

Item Value
RNA id TU60041
length 239
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G48086
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48479448 ~ 48484310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCAGAGCAACTCTGGAATCTCCTTGATTCACTggtcctctccacgctgcgtgtaataaaggcattgcaacgaatGCTCCAACCTCATTGAAGGCTGACTTTCTTCCACATTACCTGGCATCACTGGACAAGATCGCGAACCCTGACGGAGAGGACTGCAGCGCCAGCAAAATAATAAGTTGATGTCTCTTTATCGGAGTGATAGAGGATAGATGGAGCGATGGATTTCCCTCCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60040 lncRNA downstream 6516 48470333 ~ 48472932 (-) True AMCG00013967
TU60003 lncRNA downstream 111079 48366059 ~ 48368369 (-) False AMCG00013964
TU59981 lncRNA downstream 134955 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA downstream 139838 48329718 ~ 48339610 (-) True G48047
TU59940 lncRNA downstream 202127 48276736 ~ 48277321 (-) True G48025
TU60047 lncRNA upstream 21561 48505871 ~ 48506136 (-) True G48092
TU60061 lncRNA upstream 60927 48545237 ~ 48546275 (-) True G48106
TU60148 lncRNA upstream 160880 48645190 ~ 48651229 (-) True G48175
TU60289 lncRNA upstream 542974 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 869382 49353692 ~ 49354535 (-) True G48363
AMCG00013966 mRNA downstream 40320 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013964 mRNA downstream 104352 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013965 mRNA downstream 215075 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 252337 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 267420 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013972 mRNA upstream 32623 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 38240 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013974 mRNA upstream 101321 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013976 mRNA upstream 166979 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013979 mRNA upstream 261583 48745893 ~ 48754827 (-) True AMCG00013979
TU59777 other downstream 504533 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 610585 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1278551 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1604078 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2315961 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 333673 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 333673 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 333673 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1000190 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1010417 49494727 ~ 49498630 (-) True G48392

Expression Profile