RNA id: TU60061


Basic Information

Item Value
RNA id TU60061
length 1039
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G48106
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48545237 ~ 48546275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCAATCAAATGTTTATTcggtaataaaataatctggagAAACAGGTGCGGTCATTGATAGACACTTCAAGAGAGGACAAGAAAATTGGTAGGTCAAATAATATCCATCAAATGCTGGTTAATATGCAACAGGTTATATTGATTACTTTATAATCAACAGCATACATAATTAGTAATTATGATTACTTAGTCATGCCCAGTTAGTAAAACTCAACCTTATGTGACCTTGTGGATGACTTAAACAACAGGACGGGTTGTTATCAATTCACCCATGTTTACCTGATCTCCTGAACATGGCAAGGCAAGGCACAGTCATTGTTTTGGGAACTGAGCGTCTCTGTCCGTTACACACTTCTCAAGCCCCACAATGAAAGGCAGGCTCGCACAGGCACTGTTTCAACCCAATCGACTGATATGGATTAGTTCAAAATAGCTGCTGatcaatacatttctttcaGAGACCGATCTGGCAATGAATCAGCCTGACACCTAAATATTCAGAGTCCTTGGTCCCGATCTGTTTGACTATGCGCTACACAACCTTGTTCTACATTTTCTGCCCCATTTCAAGGCCAAACATCTGTTCAAACCCCAGGCCATAGCCAGCTAGATCCCCCCCGCcccaacatacacacactagtTGTAGCAGAAGATACAGAGGTACAAGATGTTTTCTCTGCTAAAGCAACTTTTATTTGCACCTCATCCAGTGTGTggacaaaaagcatttaaaaagactGGGGTATGGAGCTGCCAAGAAGCTCAAAAGAGAGTAAATATGCTCCTTGTTTTTCCCTAGATGTGTTACGGGAGTTGAATCTGTAATTGCCAGAGACTCCAGGACTATCACGATAGTTGGCAACCCCTGCTGAACAAAACCGGCTTTCTGAAGTGCACAGTGCGCTGCTGCTATAGGACCTCAGCACCCCCTGCTGGGCAGACACGGGTTGTGCAAAACAGTGAACAGGTCGTCAACTAATGGATTTATATCAGAGTTAACCCACATAAAGAGTCTGTACATTTACACAGAAGGGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60047 lncRNA downstream 39101 48505871 ~ 48506136 (-) True G48092
TU60036 lncRNA downstream 46526 48461526 ~ 48498711 (-) True G48082
TU60041 lncRNA downstream 60927 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 72305 48470333 ~ 48472932 (-) True AMCG00013967
TU60003 lncRNA downstream 176868 48366059 ~ 48368369 (-) False AMCG00013964
TU60148 lncRNA upstream 98915 48645190 ~ 48651229 (-) True G48175
TU60289 lncRNA upstream 481009 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 807417 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 906758 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 991453 49537728 ~ 49595073 (-) False G48398
AMCG00013973 mRNA downstream 21148 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013972 mRNA downstream 24500 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013967 mRNA downstream 65660 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013966 mRNA downstream 106109 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013964 mRNA downstream 170141 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013974 mRNA upstream 39356 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013976 mRNA upstream 105014 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013979 mRNA upstream 199618 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013980 mRNA upstream 211311 48757586 ~ 48776138 (-) True AMCG00013980
AMCG00013981 mRNA upstream 230225 48776500 ~ 48785225 (-) True AMCG00013981
TU59777 other downstream 570322 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 676374 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1344340 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1669867 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2381750 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 271708 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 271708 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 271708 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 938225 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 948452 49494727 ~ 49498630 (-) True G48392

Expression Profile