RNA id: TU60078


Basic Information

Item Value
RNA id TU60078
length 1537
lncRNA type read_through
GC content 0.43
exon number 2
gene id G48121
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48579971 ~ 48620338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcacatatttCTTCAGTGTAATTAATATTTAGGCCACATCTAACTAGGTGTATTATATTGAAGTAACTCTTTTAACATTGTTAACGTTGTTGTTAACATTTTCTCATGAGTTAAAGTTACTCGGCAATAGGTTTTGAAAAGACAGACTGCTGCAGAGACGACGCCATGCATTTATGGTGCAAAGTTGCTGTTTCAGGTGTTTAATGGACAATCTCAACTGGTAattcattatatttcattttattattaatctttttttttaagaaaaaacaaaacacaaaaacaatgtgaaGTTGGTATTTCAGTTCAAGACGGCCTCTCATCTGTAACACGTAATTAATGTATCCTAGAATACAATGGGAATATGTGTTTGAATATTACAGTGTAACCTTGTGACTGTAAACTAGACTCGGCTCTCGTCCTCTGTTCTCACAGCCAAGAGGGAATCTGGGTGGCTGAATGGCTTGGTTTGGGTTAAAACacaacagtatttttatttttatttgtgcatcAGCGTCACAGCACACTTGCACCTCTGCGTCAGTCGGACATGCTTCTTCAGATCTCAGACTGTTTTTTTCCATGCAACAGGAAACACAATCGGTCCAAAGCCCCAAGAGATTTCTGATTCTGACATGAGTCCTGCGCTAGTTTTCTGACGTGGCGTAGTGACTTCACCCGAGCCCTTCACTGACTTGCTTTTCATCATTATTTCTAtgatatatttcttagcaggcgCCCTTATCCGGGGAGACTTACAATTGTCACAGTAGGGCACATTATCTGCACATTCAATTACCCATTGATACAGCAGGGTTCCTGATTTGCTTTAACGACACGGCAACTGGACTCACAATCAATACTCGTTTATTCAATCCTCAATCACTCACAATGCGGCCAAGTGCTGAGGATGGGCTGATAGAAGAACGTGTTTCATTTGAAGGCCAGGAGGGCGTAGCGCGGGGCGGGACTGAGTGGAGAACAGACCAGGAAACGGCAGCCACTGGGACTGGGGAGGCCGATTCTGGGGATCATTGAAAAGTGGGACTCCAGGATCTTTAAGCTATTGCAGCTGCCAAACGAGCACAAGGAGTCTAATGGCCTCATCTGGTCTTGAAACCTGCCTGTCTGGTTATGTTCGGAAGTCTGAGGAggcaacacacgcacacgcacgcacagtCTCGATTCTGcaaagcacagcacacacatcaCATCCCAAAAAAATATCTCTTacctcttgtttgttttgtaaatgcatcattattattgttatgctttatttttgtctactttgttttgctgttgtgttttaagAAATGAAAGCAGGAGGGCAGCGAGTGCCTCCTCGGCCACTGATGCTGCCGATACGAGACACAGACTGGGGGGGGAGGTGTAGAGAAGCGACTGGGGCTGCCGTTCCCTGTGTCCTTCTCTGTACCGGGGCCTGTGTCTGCTGCTACTGCGGTTGGGCTCTTCTGAAGCTGTCACATATCAAGTGTCTA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04921 Oxytocin signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60048 lncRNA upstream 65061 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 73773 48505871 ~ 48506198 (+) True G48091
TU60028 lncRNA upstream 85932 48493045 ~ 48494039 (+) True G48075
TU60027 lncRNA upstream 104523 48472380 ~ 48475448 (+) True G48074
TU60026 lncRNA upstream 123091 48455921 ~ 48456880 (+) True G48073
TU60094 lncRNA downstream 65629 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA downstream 111787 48732125 ~ 48746141 (+) True G48134
TU60123 lncRNA downstream 171649 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA downstream 171649 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA downstream 171649 48791987 ~ 48795514 (+) False G48155
AMCG00013968 mRNA upstream 7042 48547254 ~ 48572929 (+) True AMCG00013968
AMCG00013971 mRNA upstream 33771 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013970 mRNA upstream 75360 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013969 mRNA upstream 85659 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013963 mRNA upstream 157178 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013978 mRNA downstream 95032 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013989 mRNA downstream 168135 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013983 mRNA downstream 194428 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013985 mRNA downstream 201018 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013984 mRNA downstream 213007 48833345 ~ 48838141 (+) True AMCG00013984
TU60059 other upstream 34843 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 228686 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 310699 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 324150 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 330258 48248067 ~ 48249713 (+) False AMCG00013961
TU60104 other downstream 134615 48754953 ~ 48760712 (+) False G48142
TU60105 other downstream 134615 48754953 ~ 48760712 (+) True G48142
TU60116 other downstream 156159 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 200912 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 394291 49014629 ~ 49067016 (+) False G48235

Expression Profile