RNA id: TU60091



Basic Information


Item Value
RNA id TU60091
length 1237
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G48134
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48685967 ~ 48746141 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGTATTGACTCCAGTAAATATAAAAGAGGAGTacaggaaatgcaaaataaagtaaGCCATGATGGActatttcttaatatatatatattgttttcaaaacattatggtccatatttatttttctttgaacaaaactgaaacaaccAAGACTAGTTCCATCCCATCGTCATTTCTCCCCACCTTTACCCTCAGCCCCCTGgcgcaaaataataaaataaatataaaagtattacAAGCTACATGATATTCAGGCTAAGgtgataaagaaagaaacatttggTTTTGTCCTTCACTCATGTCAGAGGCGCTGTATATCTCGTTTCGGGCCACTGTACCGGTACTGCTCATCCCCAGACTCAGCGCAGCCCCATCCGCCCGCTGTGATGTGGGTCAGAGGACGGGCCTTCAGGGTGCTCGGCCACCGGCACTGCAGCGGGGAATCGTCCGCCAACACCACCACAATAAACGTACAGCGGcaagatgatgataataacaataataacaataataatagcaaaaccACTCGCGTCCGAGTCTGGAATCACCCAACTGATTAACGAAGAGCTTCATTATCAATGACCCTGGTCCCCCCACCAGAACAATCGGAGTGGTTGATCCCCAAAGCAGATCGGGTGGAAAAGGTGACCCAGACTCTCACCCGACTGTAAAGCAGACATCTCTCCGGCTTTTCACTTCCACTCGTTTTGTATCGGGCGGGTTCGTTTTTGTTGGGAGAGGCAGAGCAGGTCATAAGCATCGCCACCTGCTCAACAGGAGATCAAGACTATACACATGTCCATCAGTGTCCTGTCTCTGGGGGGGGGCTGTGAGAATCCGTCACAGTGGTCCTGATGCCTATCCCTCCCACACTGTAGTGTACAATCCACAGGTCAGCAgcaggaaagagagagggaggcagaggaaagagaaggagagggaggaagaggaggaggaggggggggggagggaggtgtGCAGCCGCTCCTtcactgcagcagctcctcccaGGAGATGGGCTTAGAGAAGACCTCCCTCTCCAGCCACAGGTCGTAGTTCATGTGGAAGTCCTCGGGCAGCTCCACGCGCTGGCCCAGCACGCTCTGCAGGCAGTTGTCCACGGGCAGGAAGTCGGGGTTGGCTGGGCTCTTGTCGTAGCGGCGGCTGTTGAAGCGCTCGATGTTGGCCCGCAGCGCGCACTCCTCCGCCTGGAAGTCCCAGGGCCGCGCGTCCAGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60078 lncRNA upstream 111787 48579971 ~ 48620338 (+) True G48121
TU60048 lncRNA upstream 217215 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 225927 48505871 ~ 48506198 (+) True G48091
TU60028 lncRNA upstream 238086 48493045 ~ 48494039 (+) True G48075
TU60027 lncRNA upstream 256677 48472380 ~ 48475448 (+) True G48074
TU60123 lncRNA downstream 45846 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA downstream 45846 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA downstream 45846 48791987 ~ 48795514 (+) False G48155
TU60139 lncRNA downstream 76560 48822701 ~ 48823613 (+) True G48167
TU60140 lncRNA downstream 80913 48827054 ~ 48828975 (+) True AMCG00013985
AMCG00013978 mRNA upstream 5867 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013975 mRNA upstream 115973 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013977 mRNA upstream 134089 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013968 mRNA upstream 159196 48547254 ~ 48572929 (+) True AMCG00013968
AMCG00013971 mRNA upstream 185925 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013989 mRNA downstream 42332 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013983 mRNA downstream 68625 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013985 mRNA downstream 75215 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013984 mRNA downstream 87204 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013982 mRNA downstream 93390 48839531 ~ 48843626 (+) True AMCG00013982
TU60059 other upstream 186997 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 380840 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 462853 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 476304 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 482412 48248067 ~ 48249713 (+) False AMCG00013961
TU60104 other downstream 8812 48754953 ~ 48760712 (+) False G48142
TU60105 other downstream 8812 48754953 ~ 48760712 (+) True G48142
TU60116 other downstream 30356 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 75109 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 268488 49014629 ~ 49067016 (+) False G48235

Expression Profile