RNA id: TU60124


Basic Information

Item Value
RNA id TU60124
length 3498
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G48155
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48791987 ~ 48795514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAATTACATTGGATTTTATTCATCAAGTTCATAGAGAAAAACCAAAATCAGACCCTGCTTTGtaaaggggaaataaaagtaCCAGAACGGTCATGATTTGTaaagcattcattttttcttcctcaaatacacagaaaataaactcGGCCCACAGTACAAACTTAGAGCAGTCGCTGTGCAGCGACCGGAccctatatacagctctgaacgCCCAGAACCATGAGGGAcagaggaaaacacacacacacacaaaaaaacacattacaaatccTTGGGCTGCCGCTTCATCACCCCATTCATCAAGAAATTAAAACCAGAAGAGAGAACCCCCGCAATCTGCTCCTGCTTGCAGAACAGTGGACGGGCCTGGACTGGACACACTGCTTCAGTGCCAGGGCCCGGCTCCTGCAGGCAAACTGATTAACGGCTGCGAGAACCGATCGACGCCCAGGGCATGGCCTCGGCTCTGACCAGTGACACAGGCAGGGGAGGCAACGCTGGGAAGAACACagacaaataaaccaaacaacGGTGAGCTCTTTCTATCCGTGTCAAAGACGGACTGGTGGAGGCGGCGCCTGgagcactgcacacacagcgcTGCTTCAAATCTGGAGGCTCGGGTTCTCATTCCACTCTGAGCTCTTAATTGGTTAAGTGGACTGATTAAAAGTAACCCCACTGTGCTCTCTCCAGCACCGGGTGTGAAGAGTGTCGCAGCAGTGTCTCCATAGCATGTAAGTCGAGGAGATGGGAGTTGAGTCAGCTCGTTAATTAATTAGcaagcaaatgaaaacatacacgAGATCAGCGGTGGTGAAGGTGGGCGGCAGCAGGGGCCTCCTTCCATCGCAGGCACTTAGCTGCAGAAATTGCCAGAGCAACATCCCTCCTTCATTCACTCGTCCATGGTGaactcccccacccctcctcctgtGGAAGTCAACTTAGAAATgcctgccatattaaaatgagcgcACACGCAGTCCCGTCCTCCACAGCGCATTCCTCGCAgcctaccccaccccctcagTCTTTCGCGTCACGGACGTTCGATCGGTCTCGGGCGATTCCCCCGGGTGCTATTGGGGGGGGCTGGCCTTGGGCTCTGATCTACAAAGGCTGAGGCTTCAAGCAGCTTCATGAATTTGTCTGGTTCACCAAGTACAATTTCCACTGGGTGTCATTTATAAGGTCACAGCCCTACCCCACCGTGCCAGAGAGGTGTGTGATGGGATGATCAGAGCCAAACTCAGGGCAGAAGAAAACCCATCTGAACAGAACCAACTCAACCAGATGTGCAGCAGCAAGAGGCATCGAACACCCCCCCCTCTCAAGCAGAgcaaaaagaatgaaaaaaaacttcttgtatttatacacacacacgtatatatataaaatcacatgACCCCACTCCAGAACACATCATGAACCAGCAAACCCAACACACGCAACATCGTACAGTTATAATTCTTCTTCCTAACCCACAAGCCAGGCACTCTCCAGACTCCCCAGCTACGCTCTCCTAAGAGGCAGATACTTCTGTCCCCTATGtgccttacacacacacacacacacacacactctctacaAGGGTTGACAATGAGAAGATGAACACAGAGGAGACGGCGCTGTCAGTATCCTGTTCCCGAATCCTCTCGGCAGGTCTGTGTCAGGAGGTGCAAATTGACGGCTTATAGACTGGAGTTTCTATACCGTTATTTCTAGGACACAATGACAGGTTTGTCACTGCAGGGGTCTTACCAATCATGAATACGACTAtatttcacatcattagaaTAAGCTCCTCATTGTGTACCAGTGTCCGCTTCCCACCCACTTCTGGTGgctggtgtttgtttgtggagGCTCCCTTTGGTGCTCAGTGCTATGCCTTTCCAGTGGGGTACGAGGTCTTACTGGGTCAAACGGCTTGTTTTAATGCAGTCACTGTGCTCGGCTGCTGACGGACACAGTGATTGTAGCAGAGACCCCCAGAGCACGGGCAAGTGTCGGGGGTCTTCTCACTGTACACACATCCACTCACACAGAGGTACATTCAGATGAATAtatgcatgtacacacacacatgcacacatgataTTGCATCTTTAAATATCtgcattatttacttatttttctttattgctcAAGACTTTTAACGTACGTTTTGCCGTGCTGCTCCCAGGATCGcagttggtgtgtgtgttggtttcaGTTCCTGGCCCATTTCAGCACACTGCCGTATTCCCAACACTTCAGCTCCCCCCGCCTAGGCACCACACCATTTCCACTGCCAAGTCAGAGGTTCAGAGTTGGGGCTGGCGGGGCTCTAACTATTGCTGCAGATTCCCCCCAAAACATTCACAGATTCTCCTTTCAAAACCTCTGATCACCACAAAAAAACGAAAAGGAAATATCTATACAACTCTCCTCGACGCCGCTCTCAACTAACGCAGTTTTTCACGAATTTTCAGCAGATGAAAAGGTGGAAGAgcgacagagagggagagagaggaatccCCCCCcagagaaacacagaagagtcttcaaaataaaaataattgtgtgtcggGGGGGACTAACCAGGCAGAAGTGTGGAAATCAACAGCCAACACCCCCTGCAAGACTGTCTGGACACCCACTCCCCCAGAGCTCGCCTCGCAGATTCACCGCAGAGAGAAGACAATGCAGAAATATAAGACTGATGGGGGGATTAAGACACAGAAGCCTGGCAGAAGCCTCTTCACAGCAGGGCGTCCACTCGTCTAGTCTGCAGGACCGCACCCCCATCTCTGTCCCTCGGTCCATACGAGACGCCCGTATCTCCGGCACTACTGTccgatttttttctttttccttgggGGACCTGGACCACAGACAGCAGGAGGTTCCATCCGGAGACGTTCCAGCGCTGTTCAGTTTAGGGTTTTGTACCCCCCCGCCCTGTGGAGTGCATCAGTGTCAGTCTGGGGCGGGGCAGCAGGGGGCGGCAGCACAGCAGCCTAGGCAGAGCAGCTTGGGGCATCcagattgacagacagacagaaggacagacagaaggacagacagacagacagacagacagacagacagacagacagacagacagacagacagactgggGACAGAGACGGGGATGGGGGTCAGAGAAACACACGGTTAGCTGTCCATCACAgcgctctctcttcctctcctgaTCAGTACTCCAGCAGGTCCTGCAGACACAGAAAACAGCGCTCACTCGATGCACACGTGTGTAACCGGTATTGCTTCAGCAGTTTGTCTAGTGTTGTGTCAGCAGTGTGCGTGATGTGTGTGGTGCTGTGCGAGTGTCCAGTGTTTTGTGTGCGCAGGGGCCGTGCCTCGTCGGAGTCGTCGTGGTACTCTGTCTTGCCCGTCTCGGCCGCGTTGGCGTCCAGCTCATCCACCCCCTCGATGCCGTTGGCCTGCGCGTGCTGCTGCAGCACCGAGTACCTGTGGACCAGGAACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60094 lncRNA upstream 45846 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA upstream 45846 48732125 ~ 48746141 (+) True G48134
TU60078 lncRNA upstream 171649 48579971 ~ 48620338 (+) True G48121
TU60048 lncRNA upstream 277077 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 285789 48505871 ~ 48506198 (+) True G48091
TU60139 lncRNA downstream 27187 48822701 ~ 48823613 (+) True G48167
TU60140 lncRNA downstream 31540 48827054 ~ 48828975 (+) True AMCG00013985
TU60144 lncRNA downstream 50550 48846064 ~ 48851011 (+) True G48171
TU60146 lncRNA downstream 58472 48853986 ~ 48854363 (+) True G48173
TU60250 lncRNA downstream 231654 49027168 ~ 49050298 (+) True G48236
AMCG00013989 mRNA upstream 1676 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013978 mRNA upstream 65729 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013975 mRNA upstream 175835 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013977 mRNA upstream 193951 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013968 mRNA upstream 219058 48547254 ~ 48572929 (+) True AMCG00013968
AMCG00013983 mRNA downstream 19252 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013985 mRNA downstream 25842 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013984 mRNA downstream 37831 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013982 mRNA downstream 44017 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013988 mRNA downstream 91240 48886754 ~ 48888169 (+) True AMCG00013988
TU60116 other upstream 13528 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 31275 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 31275 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 246859 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 440702 48281063 ~ 48351285 (+) True G48026
TU60138 other downstream 25736 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 219115 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 281228 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 549714 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 742540 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile