RNA id: TU60139


Basic Information

Item Value
RNA id TU60139
length 845
lncRNA type intronic
GC content 0.47
exon number 2
gene id G48167
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48822701 ~ 48823613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATACATACACTACACACtcgtacatacacacatacattacacactacacacacacactacacacatacattacacactcatatacacactgacactacacatacactacacactgacactacacactcatacacacactacacacacactcacacatacattacacactcatacacacacagactacacacacacacacacacttattataatttttatttcttggcagacgcccttatccagggcgacttacaacataaaacaaagtacaaagaTTCAGTtaggtaaaggcatcaatcattacaaattcaatctaactaaaacatagcaattcaaaacaatacattttacaaattacaatttacacaaagtacagtaagtgaggtcctacaccCTGGACGGTACTGTCAAGGCCTGCGGGAAGGGGAGCAAGGAGGACAACATAATAACTGAGAAGTGCtgtctaacggggattaaagcTCTGTGGGAAAGTACGAGCACAGCTGGCACGGTGTGGCACATGCTGCCTGCCCGGGGCTGGTGTCCGTGTCTGGGCGGGACAGGGAGGCAGAGACGCGGCTGTGTGCCCGCTGTGTGCCCGCTGTGTACCCCGGCGCTCCTcgcctctctgtctctgtcgtTTTGTAGTTGTtcgtgtgtttgtgttggaggTTTGTGACGACTTTAAATCGCACAGGCCGTTGCTGAAATGTCTTGCATGTGTGAAACGTGGCTTTGGGACTTGCTGTAGAACAGAAATCAGACATAATGTATCATCCACAGACTCCACAATAAGCCCCGCACTGCGGCCTCCGCTGCGAGCTGCGTGTCGGTGCGGCGGCTC

Function

GO:

id name namespace
GO:0051129 negative regulation of cellular component organization biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0051983 regulation of chromosome segregation biological_process
GO:0051985 negative regulation of chromosome segregation biological_process
GO:0010639 negative regulation of organelle organization biological_process
GO:0000819 sister chromatid segregation biological_process
GO:2001251 negative regulation of chromosome organization biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:1905818 regulation of chromosome separation biological_process
GO:1905819 negative regulation of chromosome separation biological_process
GO:0010948 negative regulation of cell cycle process biological_process
GO:1902099 regulation of metaphase/anaphase transition of cell cycle biological_process
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle biological_process
GO:0031577 spindle checkpoint biological_process
GO:0010965 regulation of mitotic sister chromatid separation biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0051783 regulation of nuclear division biological_process
GO:0051784 negative regulation of nuclear division biological_process
GO:0044784 metaphase/anaphase transition of cell cycle biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0045841 negative regulation of mitotic metaphase/anaphase transition biological_process
GO:2000816 negative regulation of mitotic sister chromatid separation biological_process
GO:0007059 chromosome segregation biological_process
GO:0071173 spindle assembly checkpoint biological_process
GO:0071174 mitotic spindle checkpoint biological_process
GO:0051304 chromosome separation biological_process
GO:0051306 mitotic sister chromatid separation biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0007094 mitotic spindle assembly checkpoint biological_process
GO:0033044 regulation of chromosome organization biological_process
GO:0033045 regulation of sister chromatid segregation biological_process
GO:0033046 negative regulation of sister chromatid segregation biological_process
GO:0033047 regulation of mitotic sister chromatid segregation biological_process
GO:0033048 negative regulation of mitotic sister chromatid segregation biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:1901987 regulation of cell cycle phase transition biological_process
GO:1901988 negative regulation of cell cycle phase transition biological_process
GO:1901990 regulation of mitotic cell cycle phase transition biological_process
GO:1901991 negative regulation of mitotic cell cycle phase transition biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60123 lncRNA upstream 27187 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA upstream 27187 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA upstream 27187 48791987 ~ 48795514 (+) False G48155
TU60094 lncRNA upstream 76560 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA upstream 76560 48732125 ~ 48746141 (+) True G48134
TU60140 lncRNA downstream 3441 48827054 ~ 48828975 (+) True AMCG00013985
TU60144 lncRNA downstream 22451 48846064 ~ 48851011 (+) True G48171
TU60146 lncRNA downstream 30373 48853986 ~ 48854363 (+) True G48173
TU60250 lncRNA downstream 203555 49027168 ~ 49050298 (+) True G48236
TU60257 lncRNA downstream 244492 49068105 ~ 49112083 (+) True G48243
AMCG00013983 mRNA upstream 6493 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013989 mRNA upstream 32390 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013978 mRNA upstream 96443 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013975 mRNA upstream 206549 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013977 mRNA upstream 224665 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013984 mRNA downstream 9732 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013982 mRNA downstream 15918 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013988 mRNA downstream 63141 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013995 mRNA downstream 73189 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013992 mRNA downstream 84524 48908137 ~ 48913068 (+) True AMCG00013992
TU60116 other upstream 44242 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 61989 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 61989 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 277573 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 471416 48281063 ~ 48351285 (+) True G48026
TU60248 other downstream 191016 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 253129 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 521615 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 714441 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 714441 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile