RNA id: TU60146



Basic Information


Item Value
RNA id TU60146
length 378
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G48173
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48853986 ~ 48854363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGAAGGGAAAGGaaacatgtctctctctcttcctccttttcTTGGCTGCTGTCCCTTTCCCACACCACTATCCTCAGCAAGgaccccctctcctcctccacctcctcctacTCCTGAAGCAGACGAGTTATGAATGCGTAAATCAAAAAGGATAAATACATCCCCAAAGCAGATCGCCTTTCTTCCCAAGGAGCTGGCCGTCCGTGTTGGTGCGTCTTCTCTTGCAGCTTCTCAGGCTCATATAATCAAATCCCGGGTTCCTCGGAGGTGCCCGATAAAAACCCGCTGCAttgctctttttttcccttcttccctCTTCGTGGAGTCGGTGAATGGGAGGCGCGGAGGACCGGGTCTCCGGAGCAGGCGAGCGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60144 lncRNA upstream 2975 48846064 ~ 48851011 (+) True G48171
TU60140 lncRNA upstream 25011 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 30373 48822701 ~ 48823613 (+) True G48167
TU60123 lncRNA upstream 58472 48791987 ~ 48795514 (+) False G48155
TU60250 lncRNA downstream 172805 49027168 ~ 49050298 (+) True G48236
TU60257 lncRNA downstream 213742 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA downstream 235951 49090314 ~ 49095546 (+) True G48235
TU60383 lncRNA downstream 598670 49453033 ~ 49453872 (+) True G48353
TU60389 lncRNA downstream 599621 49453984 ~ 49456698 (+) True G48354
AMCG00013982 mRNA upstream 10360 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013984 mRNA upstream 15845 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013985 mRNA upstream 26561 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013983 mRNA upstream 37778 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013989 mRNA upstream 63675 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013988 mRNA downstream 32391 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013995 mRNA downstream 42439 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013992 mRNA downstream 53774 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013993 mRNA downstream 84699 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013996 mRNA downstream 490734 49345097 ~ 49348601 (+) True AMCG00013996
TU60138 other upstream 27931 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 75527 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 93274 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 93274 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 308858 48541942 ~ 48545128 (+) False AMCG00013971
TU60248 other downstream 160266 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 222379 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 490865 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 683691 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 683691 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile