RNA id: TU60148


Basic Information

Item Value
RNA id TU60148
length 5995
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G48175
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48645190 ~ 48651229 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacatGGGCCGGCCTCCCCCTCACACAGGGAACTCTGCACCTTGGCCAGTGCAGGAACGTTTCCCGTCCCCTGGATCCGCATCCTGCAGAAGAGACCAAGGGGGCACATCTTTGAAAAGCCAGGCCTAGCTGCAGccaggtttctctctctctctctttccttctctatctctctcattctctgtttcattctctctcacactcttttctctctctctcactctccctctgaCTAAACTCTTGAATACATACCTGTCTGAGCAGAAGTAGTAAGGTTGGCAAATCCTGTCCTTCCTGGTCATGATCCTTCTGTTCTTAAGCTCTCAGTCAAGCGGGAGACACTTCACATGCGgtcaaaacaaacatacacaattcCAGTTGCAGCAGTTTTAAATGGTTATCGTCTTATTATTTCCAAACGAGAAAGCTGAGACCCGGGGACTGGTGCGCCCCGCGGCTGAGAGAGACCGAAGGCCCGTCAGTCTCTTGTGCAGTTTGATCTTCAATCCAGGTTTGACCCAtgacactccccccccccccacagccgcCTCCTTCCTCAGGTGTCAGCTCCTGTGTACAGAAAGGTTAGCTATCAGCTCAGCCGCACTGTGGTGTGCAGAGAGGGCAGCATCACTCTTGTCAGGGTGGTAAGGATGCCACCAGAAAAGAAAGGATTGGAGGCAGAAGATTGAAAGACCTATGACTCcgccccccacctccctcaaAAATAAAGCTGTATTATTGTAGCGTAGGTAGGTAGAATGTGGTGTAGTAGGTGTCTCAACAACACAgctggttttgttgttttatttatttatttgtgttttggcaAAACCTCATTAAGTTGCCTTATCGCCCTGAATAgctgagaaacacaaaacaaaacaattcaaaacgCTGTCTTTGAGGAGGAAATGAACCCAGAATGATCGATGTCATCCCTGGCTACAAGATTCCACTATAATTTCCTGCATTCATCTCTTTTggaaattgaaagcaaaaaaagaacATACCCTGCAATTGAGCTGATAACATATCCTATACAATACGAatcatgtcagtgtgtgtcccaGTCCTGTCTGCCGGCGCTCACTGTGGGCagctgtgtgggttttctcctgACACTATTGCAAatgcagcaaaatacaaactGGGTGGCACGAGATAGTTGTGGTGACCCAGTGATTTAATTCAACAGTACAGAGATGAGTGGTCACTGGTATTCGTTTCCTGTTtgaaaaaagcagttttggAGCACTGGCTGTTTTGCAGTTCATTCAGATTGATGTCATCCCTGCTGGGGGGGCATTCCTTGGAAAACTTGGTGTCCATTTTAACACAGCACGGAGCCAAGCCTCTTCCCAGGGACCATTGAGAGcactttattttatgaattttgTGCAATAAATGAATTGACCGGAAAAACAAGAGACCCTGACTCCGCAGGAGACCGCTCCACGAGCATCAGCTTAATATCGTACATTCatcattaattttgttatttatttaaagttttttgaCTGTCAGCTGTTGGTCACCTACTATATTTCCAGGTGTGTTAGAACAGTAATGtagttttgtgttgtgtagGACTTATATACTGTAACAATGCATATATGTAAGTATGGGAGAAACAGGACTGAGGACATATCTCTCCCATTTTacgtaaaattatatataaggCAAAGAAAATTGTGTTGAAACTGCACAAGCAACAGGTGCCATATAGACACTCTGCAATGGCAACGTGACAACAGGAGACATGATAATTTGTTAGGTAGTGTAGCGCCTGTGCTTTCTGTCCCACGGAAACCCTCAGACAGGAAAAACACAGTTCTGCATGAAGCACAAGAAAGACGGCTCCATTCACGGAGCCTCTGCGAGTCGCAGCCCTGCCCAACTGCATGCTGGGATAGCAGCTGGTATTCAGAAAACATTGAAGGGAGAAAAACCCCAAGAGTTTACCAACAGCCTCTTAAGTGCACCTCCTGTGACATAAAAAATACCCAGCATACAATtaaagaattaataaataatttatttattaattaatttaataaaatagaaaaaaactgCCTCTGACAAACTCACTAGGACGTTCCTGGCAGTCACAAGGAGGAGGTCAGCCATGCTGTCTGATCTGAGACTCCCCTTGAGCATGGAGAGGGGCCTTTGAGTAATAGGTATTTCAGTATTAAGAGCGAACCTGTCTGAGGGGGTCACCTCAGGCACGGTGCTTAGACACAGGCTGGTTATAAACTCTGTGGGGTCCGGTCAGCTGCAGGTGTTTGCTGGGGTGTTTTAGGAACCCTGTAGGGGGTGTGCAGAGATGGCCAGAGGTGACACGGTGAGATGCACACACTGCGCTGCTGTGCCGTGTGGTCCAGGTCGATTTCCTTTCAAAGCACCAGGCCAGGTTTAAATTACGCATATCCACCAGTCATGCTGCCCCTTGTTGAAATGTGTATGTTCAGGAAACACAGAGCAAGCCGTATACTGCACAGTGAGGAGATCTGATGATCTGGCTGCTTGTGAGTTGAATATATTCCTCAGAGCACCGGCAGAGTGTTCTTCGTTTGTTTACCTTCTAGCAAACttttatgtctttcttttttagatGAAATGGTGCTCGTGAGATATTACGATTCAATGTATTTCTGAGTGACTCCAAATgaccataaaaaataataatatgaagaaattatataaattgtagAGATgagaaaagggaaattaaacCAAACCAAGTCTATTAGTAAAATGACTAGTgacagaaatgcaaatgcaaccgagccaattaatttgtattcatttttaaagcgGTAAATAGACATGTCTAAATGTCTTTGGTGACACTGTCAGATTTGTGCTCATTCACAATGAAGTGCTGTTACACTTTAATGTAATACAAGAATGTTTCAAAGGGATATGAATTCAGAAGGAAATTGTTCGCTTGGTAAAGTGAAAAATCTTATTGGATGGCAACTCCGTAAataattttaacaaacaaacaaaaacttgagAACAGAAATTAACAGGACAGGAGTTCAGCCACCAGGTGACACTACAAGCTATTCAAAAAGCATTGGGGGAAAACCACAAAAAGGACACAGATGACAGTGTTTGATGTTCTGCACACCCCGACCCATGTTGATCTGCTCAGGTGACACAGAGCACAGTTGTTATGAAGCACAGTCTTGTGAGGGTGTCTGGACTCCTCCTCGAGTCTCCGGTAGCCCGCTGTTTTAATCAGTCGCACTGGTGTAGAAGCTTACAgcattgtcttgtttttgtcaATGGTTAGGCATAACCAGTCTGTGCACTTTACTAGGGGCAGAGCTGCTGGTGTTAAAGCCGACACCATGGCACAACTCTCTcaatctcactctctctctctctctctctcacacacacacacacacacacacagacccacaaaCCGACAGACACCCTCTATCTGACTCCAGGTTACTCCCTGACTGATGTGTTCAGTGTCGTAGATATCGTGTTAAGCTGTACTTCTTCGTTAGTGGTCCCACATGTCAGTGTGTTTCTGGGACACTCGCTCATGCTACAAAGTGCTTCTTCGGGTGAGTTAACTGGCGTGAGATGGAGGATGCGACTATGTGTCCGTCTGTAACAGTCAACCCTGGCAAACTAATCTAGAGAAGCAAAGAGATCCAGAACGCGAGGCTGCAGAGAGCGCCAAGTAACAGATAAGCACAAGAGTGGCAGTTTATTGCACAACATGGCCCAGCACAGGTCAGTACAGCGCAGGACAGTCcactacagcacagtggagcacagtccagtccagctgTTTCTAATCAAACCGATCGATCCAACAATCGATCCAATAATCACTCACTACAAACACCAGGACCTCTGCCCTCCTAGTTAGATCCTGCCcaatgatagtaataataataataaaaaaatcgtaagttctgttatttttaaatgattgtctatttatgtatgtatgtgtgtatttatttatttatatactcactaatttaattatttttttattgtgatgctAGAAGCCATGGTAACTTAGTGACTAAATCAATGCCTATATTTctaattattgtatatttaaactgtatatgTGGGTGTACATTCTGTCAAATGAACAATGAAGACTATCTATAAGTGACTCTCTCATCTTctgtgctgtatatatatatatatatatatatcattgtatATTTGgagatatttataatttttgtagCCAGTGTACCCTTCTCTTTGGCCACGGGGTGCAGGccGTGTTTGTTCTCTCCTCTCGTGCTTCGTGCTTCTGATCTTAGATGCTTGTCTTTGTGATTGCGTGACAGTGGCGGTGGGTCTCTTGTTCAGACACTTCCTGTAGCTCTTCCCAGTGCAGCTCCCTGCTAGGACACActcaaacaaaggaaaagcCACACATGCTCTGCAGCGCTGGTACCAGAACACCAGGGTTACCCAGTACGGCCCCGCAGTACGACTGGGCTCTGGTACTGCTTCAGGTAAGGTGCTGACAGTGTGCTTTTCCAGTGAAGTTTAGGAACATCGCAgctcagtgtatcagtgtggcAGTCTGTGTGATTCAGCTCagtgatacaaataaaatgaaaccttatCCTGAGGGAAAGAAAATACTGTAGTATTTTGGCCATTTTCCCCAGAGACGTGTCTTTAGTTTTTGTATGAAACTGTACAAATAGCCTTCGGAATCTCTGaccataaaataaagaaataaaatgatcagAATCAATAAGATTCCTCAGACGCTTTTTGATTTTGTCGTGGGGGCTTGACTGGAGGTGCAGACTGGACTCATGCGGGACGATGGCTGTTTCGTTTGAGTTATCCTCGCAGAGAGAGGAACACGATCGTGCAGCGGTTTCTGCAGTAACTCCTTGTTGTGTTAATCGCAGACTGAAGACTTCAGAGACGTGTTGCACAGCGCTGCACTCTGTCCAGACGCCGAGATGTGTCACTGGCTTTATCAACGGCAAGTACAGGACATTGCTCTTGGTCAAACGGTCCTGGTACCAGACTGAACTGCACTTCAGAAATCAACTGCaaattctactactactaccattATTACTGCAACTGCATCTTcgtcttcatcttcttcttcttctactactgctactactactatactactactacaactactcataataataataataataataataataataataataataataacctgcaTTAGGCACAGTTTGGTTTTCACAAAAAGACAcagcacagacaaaaaaaaatacaatgctgTCACGTTGGCtcttaattggataattggatGTTAACGATGAAGGCGGCTGGGTGGCGTCCCCTGTGCTCTAGCCCTAGTACTGCACAGTGTTGCACATGTGTAATAAGCACTTTGTATCCCCCTGTTTTTGCTCAAACTCAGTGTCTTGGTGTACAGAGAAGAGAGACACTGGCGTCTGTAACTCTGGGTACAAACAAGAGTGTCCTTCCGCTGTTggatgtaaataaataaaaaacacaaatagtaataataataataaaagaataagaataatcGTATAGTGTTGGTGTCAGAGTCTCGCTTGGGGAAGAGTACCCCGCTGTGGTCAGAGTGTGTAGTGACCcgtgctgtttgtgtgtgtgtgtgtgtgtgtgtacgctTCCTGCTGTCGAGGTTTAAATTATAGCCCAGAAGTTGCTTTCCACAGCTGTGGACTGAGATCGGGTGCAGgtgtgtaatttgtgattcaggGGCCGGTCCGTGTCTTGATCCACTCACGGCCTGGGTCACCCTGGGCTGAGCTCAAGCCCAAATGAGCAGCCTGAGCAGTCACATCACACAGGGAGCTAGGTGCCCTCTGTGAACCAGGCCAGAGGAGTATTGTGTAGTTTGTGTCCTGACgattgtacagtatttaaactCAGTGTGAAAACATTACTAATGAATACCActcccaaaacaaaaaatataccaataaagggaaaaaat

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60061 lncRNA downstream 98915 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 139054 48505871 ~ 48506136 (-) True G48092
TU60036 lncRNA downstream 146479 48461526 ~ 48498711 (-) True G48082
TU60041 lncRNA downstream 160880 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 172258 48470333 ~ 48472932 (-) True AMCG00013967
TU60289 lncRNA upstream 376055 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 702463 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 801804 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 886499 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 890130 49541359 ~ 49545278 (-) True G48398
AMCG00013974 mRNA downstream 56869 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013973 mRNA downstream 121101 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013972 mRNA downstream 124453 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013967 mRNA downstream 165613 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013966 mRNA downstream 206062 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013976 mRNA upstream 60 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013979 mRNA upstream 94664 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013980 mRNA upstream 106357 48757586 ~ 48776138 (-) True AMCG00013980
AMCG00013981 mRNA upstream 125271 48776500 ~ 48785225 (-) True AMCG00013981
AMCG00013987 mRNA upstream 141145 48792374 ~ 48792875 (-) True AMCG00013987
TU59777 other downstream 670275 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 776327 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1444293 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1769820 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2481703 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 166754 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 166754 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 166754 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 833271 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 843498 49494727 ~ 49498630 (-) True G48392

Expression Profile