RNA id: TU60243


Basic Information

Item Value
RNA id TU60243
length 609
RNA type TUCP
GC content 0.57
exon number 5
gene id G48231
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49076742 ~ 49100458 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAGGTCACACTCCTCTCTGTGTTGGTGCCTCTGACAgatgcctgtgtggagtttgacGAGCAGAACCACACTTCCAACTGGACAGATCCCAGAAGGGCAACCTCAGCTGTAGAGGAGTTTTGGGAGAGGCGAGTGCTGGGTGTCTCGGGGGGGATCGACCAGGTGGGCGGCCTGAGGTGGGAGCTGACCCTGTGCCTCCTGCTCTCCTGGATTGTCTGCTATTTCTGTGTCTGGAAGGGGGTGAAGTCCACAGGGAAGGTGGTGTACTTCACAGCCACGTTCCCCTATGTGATGCTGCTGGCGCTGCTGGTCAGAGGGCTCACCCTGCCTGGTGCCGCTGACGGGCTGCTCTTCTACCTCTACCCCGACCCCACCCGACTCACTGACCCACAGGTGTGGATGGATGCAGGGATACAAGTCTTCTTCTCCTTCAGTGTTTGTGCAGGACTGCTTATAGCTCTTGGCAGTTACAACAAGTATAACAATGACTGTTACAGGGAGTCCTTCTACCTGTGTCTGCTGAACAGCGGCACCAGCTTTGTGGCCGGGTTCGCCGTCTTCTCTGTGCTGGGCTTCATGGCGCAGGAGCAGGGAGTGCCCATCTCA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60250 lncRNA upstream 26444 49027168 ~ 49050298 (+) True G48236
TU60146 lncRNA upstream 222379 48853986 ~ 48854363 (+) True G48173
TU60144 lncRNA upstream 225731 48846064 ~ 48851011 (+) True G48171
TU60140 lncRNA upstream 247767 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 253129 48822701 ~ 48823613 (+) True G48167
TU60383 lncRNA downstream 352575 49453033 ~ 49453872 (+) True G48353
TU60389 lncRNA downstream 353526 49453984 ~ 49456698 (+) True G48354
TU60422 lncRNA downstream 384031 49484489 ~ 49484959 (+) True G48372
TU60526 lncRNA downstream 579039 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 629213 49729671 ~ 49731800 (+) True G48460
AMCG00013993 mRNA upstream 119877 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 163674 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013995 mRNA upstream 172712 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013988 mRNA upstream 188573 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013982 mRNA upstream 233116 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013996 mRNA downstream 244639 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00014005 mRNA downstream 313497 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00014004 mRNA downstream 340926 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014010 mRNA downstream 439972 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014009 mRNA downstream 451701 49552159 ~ 49556841 (+) True AMCG00014009
TU60248 other upstream 9726 49014629 ~ 49067016 (+) False G48235
TU60138 other upstream 250687 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 298283 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 316030 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 316030 48754953 ~ 48760712 (+) True G48142
TU60357 other downstream 244770 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 437596 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 437596 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other downstream 437596 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other downstream 437596 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile