RNA id: TU60248


Basic Information

Item Value
RNA id TU60248
length 381
RNA type TUCP
GC content 0.56
exon number 3
gene id G48235
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49014629 ~ 49095546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTCTCatgctattttctgcaactccTCAATATTTCTCTACCTACAACCAGCAGCTATTTTGATGGCTGAAGCCCAGTGCGATTTGACGCTGCAGGAGAGCAGCCTGGGGCAGAAGGGGCAGAAGATAAAGGACAGGGGGCAGTGGGCAAACAAGTGGGAGTTCCTCCTGGCTGTGGCTGGAGCCATTGTCGGGCTGGGGAACGTGTGGAGGTTTCCATACCTGTGCTACAAGAATGGAGGAGGTGCCTTCCTCATCCCCTATGTCCTGTTCATGCTGACCGGTGGCATTCCTCTCTTTATCCTGGAGACAGCGCTGGGGCAGTACACCAGCCTAGGGGGCACAGCCTGCTGGAAGAAGATCTGCCCCCTGTTCGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60146 lncRNA upstream 160266 48853986 ~ 48854363 (+) True G48173
TU60144 lncRNA upstream 163618 48846064 ~ 48851011 (+) True G48171
TU60140 lncRNA upstream 185654 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 191016 48822701 ~ 48823613 (+) True G48167
TU60123 lncRNA upstream 219115 48791987 ~ 48795514 (+) False G48155
TU60257 lncRNA downstream 1089 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA downstream 23298 49090314 ~ 49095546 (+) True G48235
TU60383 lncRNA downstream 386017 49453033 ~ 49453872 (+) True G48353
TU60389 lncRNA downstream 386968 49453984 ~ 49456698 (+) True G48354
TU60422 lncRNA downstream 417473 49484489 ~ 49484959 (+) True G48372
AMCG00013993 mRNA upstream 57764 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 101561 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013995 mRNA upstream 110599 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013988 mRNA upstream 126460 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013982 mRNA upstream 171003 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013996 mRNA downstream 278081 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00014005 mRNA downstream 346939 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00014004 mRNA downstream 374368 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014010 mRNA downstream 473414 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014009 mRNA downstream 485143 49552159 ~ 49556841 (+) True AMCG00014009
TU60138 other upstream 188574 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 236170 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 253917 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 253917 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 469501 48541942 ~ 48545128 (+) False AMCG00013971
TU60243 other downstream 9726 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 278212 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 471038 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 471038 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other downstream 471038 49538054 ~ 49545335 (+) True AMCG00014010

Expression Profile