RNA id: TU60289


Basic Information

Item Value
RNA id TU60289
length 309
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G48275
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49027284 ~ 49050432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAAAGCTAAATCTGtgaacaatttcaaaattacGGAAGTTTGGTCTGTCTACGTGCTCTACACCCCCATCATTATTATCAGCATTGATATTATGGCaatccccaccaccaccagtATTTGTTCTATCATTAATCCCCCGAACATCTTCAGCCTCTTTGTTGATATTTTGAACATCGCTAAGCTCGCGACTAAACCCATTGTCAACACCTGCAGCTTCACTGTTCTGACCAGGGTCGTTCGTATCAGGATCATTCTCTCTAGGTCTTTTGGACTCCTGCCTGTGAATGTCTGCATCATTGGTCCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60148 lncRNA downstream 376055 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 481009 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 521148 48505871 ~ 48506136 (-) True G48092
TU60036 lncRNA downstream 528573 48461526 ~ 48498711 (-) True G48082
TU60404 lncRNA upstream 303260 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 402601 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 487296 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 490927 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 563264 49613696 ~ 49613974 (-) True G48430
AMCG00013994 mRNA downstream 101371 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00013990 mRNA downstream 174314 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013991 mRNA downstream 207451 48818623 ~ 48819833 (-) False AMCG00013991
AMCG00013986 mRNA downstream 219697 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013987 mRNA downstream 234409 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00014000 mRNA upstream 242695 49293127 ~ 49298717 (-) True AMCG00014000
AMCG00014003 mRNA upstream 252190 49302622 ~ 49310125 (-) True AMCG00014003
AMCG00013998 mRNA upstream 261878 49312310 ~ 49317429 (-) True AMCG00013998
AMCG00013999 mRNA upstream 269739 49320171 ~ 49326142 (-) True AMCG00013999
AMCG00014002 mRNA upstream 277010 49327442 ~ 49330861 (-) True AMCG00014002
TU60179 other downstream 206128 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 206128 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 206128 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1052369 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 1158421 47864850 ~ 47868863 (-) True AMCG00013946
TU60423 other upstream 434068 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 444295 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 669333 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 678072 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 694514 49744946 ~ 49747551 (-) True G48516

Expression Profile