RNA id: TU60389


Basic Information

Item Value
RNA id TU60389
length 2638
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G48354
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49453984 ~ 49456698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTTGAGACGCTGTCAGAGAAACTGAAACCCAGCCGCTCTGAATAACACTCACAGCGCCTCTGTCTTTGTAAGAATTTGGTTTAAAGTCACTTTATTCAAGAAagcccattaaaaaaaaaaagtttttaaattattattttttttttttaaaaaggaatttttaaaagaatgtacatattatttaacataataataacaccacCGAGAGATGTAATAAACTCTTATTCGGTAACTATTCAACCAAATCTGACCACATATTTTCTGCATACATTACCAAAAGAGATGCTTTaaaccccccccaaccccaaaaaagtgcaaaattaaGGTGATGTAAACAAAAAGGCAACAGAGACTTCACTACGGACGGGGTCTGTGGATGTCCAGTCTTGGACCATCGCAAGTGTTCcccagacaaacaaacaaaaacaatcataaagGACCCCCCAATGAAAAAgcaattgtatatttttcttgcTGCGCTCTGATCGCTGCCCACCTCCCGCCCACCGTGCCCACCCCCCCGGGGAGGTGAAGAGGGAGAGCGAGGGTGGTGAGGGACAGGAGTGCATTCTGGGAGCAAGCGAGTGAGCGCATACGACTGACAGCAGCGACGATCGGAGCAgccactacacacactacactaacAGCAGCCATTAGACAGACTGGCGAACTGAGCTCGGCCTCTCAGGGACACAGACCTGCGTCGCTGTGTTTAGTAAACATACAAACCATTGCAGGGCTCATCTGTATATACAGGTTTAGTAAAGACAGACTGGCAGCAACCTGTGCCCCCAGCTGGTTTTAGCGTTTGGAAAAGTCACGGTATTCGAATACGCTGCCCCCACAAGGGCAGGAGGCGTAGTGTCCAGAACCCGACCGGACCCCCTCAGCCTCGCCCTCGCCCACCCGGCCCGGGCGTTCCACACAGATACCACAGGGCTGGGCACAGCGGTCCGCCGGACAGGCCATCGATACAAAAGGACattatttacagaaacatcCACGTGTCTCGAAATTGTGAGCTGAACGCAAAGTCTCGAGAAAATAATAAGTAGATATTCatggtgtgtgcgtgtgcgtgcatgtTTTAACCCCTCCCCCGACCGAGCTccccgccccctctctctcagcgcTGGACCATGGCTGAACTCTAAGCTGCTGAGCTGGTTCACCTCATTAGTGAATGTGTCCCCCTGCTGCCTGTGGAGAACCATGGACAGAGGGCGAGGGACCGGATCCACAAACAATCCATCAAAGccagttgtaaaataaatacgcGCTCAAGCGGAGTCCCGTCCTGAACAAGAGACTCCAAGGGGACAGTGGGGTTACTGTGGGCTTACGGCTGCGCTATGGTGGCGTCACTGCAAGTCTCTCAACAGCTCATGAATCTTTGGAATTAAAGGAGAAATGCAGCCGGATATTTAATTGAAGAATTAGTACAAAAACCTCATGAGGATAATAAAGCGCTGTCTTGTGTTGAGCccgcacagcccagcacagggGTCTCAATGCAGGCCAGATCCAATTAAATGTGAATAAGACGTCTGTacgcacccccctccccctctcaagtatgtgcatgtgtgtgtatacacatatatatatatatatatatatatatatatataattacacacacagacacacacacaaacacacaaatatacacacgtATAGATAGTCTACctttattatttcagtaaaaCATCCATGCAGTTAAGTGGTTTATATTCTCTATACACCGCGACTGAGGACTGCAGAAGCACCAAACAGACCAAATGAGATGCAAAATATCAGACTtcaacatcataataataatacattataacgcacacatatatatgtgtatatatatatatatcgagtTTCACGATAGGCCAGATCTGTCACCTGATCAGCTCACCAAAGTTCCGCCACCAGAAAACACAGCATTCTCATTGGCTGACACTTGTCCAATCACAACAGGGCAATCCCCTCCATGTTACTATCCCTAGACTCTGCCGGCTCGGCCCTGAACCAGAGGGTATGAATTACAGCCTCCGGGGGGGCACTCTGGACTCTCAACAGGGGGGGGCTTCCCTAGAGTCAACGGCAGAGCtcaaacacacacgcacggCCGGCCCGGGGGTCCGGCGGCGGCAGTGCACCCCAGCTCCTGTGTGGCAGAATGACTCGGAGCATTGCTCTCtataaatctgtatttaagAGTCAGTGCGCAGCTCTCTCTTGCTCCATGCCGGGGGCCGCGGGGGGCTTTGGCCGAGGActtattttcttgttcttttgtttttgaaacacTGTCAGGCaattttgtggttgttgttgtttggttgcTCTTGaagtaacaaaacaaagggaaagcacataaacaataatacaaaaaaatcttcaaTTAATGCATCGATTTCATCCagttaaaatcatatttaaaaaatgataacaGTGCAAATGTTGCTCACGACCGTTGGACCACAACACGCACTGGGCCGGTGAGCCTggcgggggggggcggggggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGGGAGGGGCTCGGGAGTCTCAGCTTCTCCTGGTCCGGGAGTGCTGGATCAGCCACTGTAGTGTgatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60383 lncRNA upstream 112 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 341901 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA upstream 358438 49090314 ~ 49095546 (+) True G48235
TU60250 lncRNA upstream 403686 49027168 ~ 49050298 (+) True G48236
TU60146 lncRNA upstream 599621 48853986 ~ 48854363 (+) True G48173
TU60422 lncRNA downstream 27791 49484489 ~ 49484959 (+) True G48372
TU60526 lncRNA downstream 222799 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 272973 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 289817 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 296886 49753584 ~ 49754027 (+) True G48467
AMCG00014004 mRNA upstream 5233 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014005 mRNA upstream 34087 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00013996 mRNA upstream 105383 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00013993 mRNA upstream 497119 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 540916 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00014010 mRNA downstream 83732 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014009 mRNA downstream 95461 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014022 mRNA downstream 108266 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014015 mRNA downstream 113503 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014013 mRNA downstream 131479 49588177 ~ 49594866 (+) True AMCG00014013
TU60357 other upstream 106763 49345228 ~ 49347221 (+) False AMCG00013996
TU60243 other upstream 353526 49076742 ~ 49100458 (+) True G48231
TU60248 other upstream 386968 49014629 ~ 49067016 (+) False G48235
TU60138 other upstream 627929 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 675525 48776497 ~ 48778459 (+) True G48150
TU60435 other downstream 81356 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 81356 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other downstream 81356 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other downstream 81356 49538054 ~ 49545335 (+) False AMCG00014010
TU60500 other downstream 157003 49613701 ~ 49617240 (+) True AMCG00014021

Expression Profile