RNA id: TU60417


Basic Information

Item Value
RNA id TU60417
length 840
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G48370
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49453033 ~ 49453872 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTTTCTTGCATCCCTCACTAGCTGATTGGGAGAAGCTGGTGAGGGGCGGGGCCTTGACGACTGCAGCCCTAAAGGACCAGGAAGAGAATCGATGCCAGAGTCAGGTGTCCCCTCAGGGTGTCCCCTCAGGGCATCGCCTCTCGGGCCCGACCCCTGGACGACCTCTCCATCTTGTCAATCCTCTGTACGTTTGTGTGTCGATTAGTTTGGTCCGTCCCAGATGGTCTGCGTTGTCTGCAGAAGTCATGTGGGTTAGTGGCCGATGATTGAGATGCTCTACCTGTGACgcttcccccctcccctcccctcccctcgaGGTCAGAAGTCAAAGGTTAAAGGTCAAAGGTCTTGGTGGAACAGGTAGAGCTCATGATGAAATGCCCCCCCCAGCATGTTCTGGGCTGCACCCCACTTTGCCGGGCACAGCCTCTCTCTGGACTGCGCttgagtttgttttcctttttaatgttttccttttttaaatatgtacatgaaTTAAAGTGACTGTTGTGCTCTGCAggtgttaatattttatttagcgATCTTATGGTTTCTTTTATCCTCATTTGAAgtaaaaaattaacaaaaaaacacgacaaaaaaaaaaaaaaactactaaaaCTTAAATCgaatctttttaaattgttaacaTGACCAGAAAAACCACATTGAGTGTTTGTGTGATACATCTGTGAGGAGAGAAACGAGCGACAATTCGAGAGCTCATTAAACCAGTCTGTTTTAACTCGTTTATATTGTCCTGCCAGTGATAGATGtactgttgctgttgttatcttgaaataattaaaatggtaaataaacaatttcccACACAGAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60404 lncRNA downstream 98498 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 402601 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 801804 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 906758 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 946897 48505871 ~ 48506136 (-) True G48092
TU60464 lncRNA upstream 83856 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 87487 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 159824 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 164405 49618277 ~ 49618955 (-) True G48433
TU60512 lncRNA upstream 168225 49622097 ~ 49623191 (-) True G48437
AMCG00014001 mRNA downstream 67382 49354962 ~ 49385651 (-) True AMCG00014001
AMCG00013997 mRNA downstream 100335 49347284 ~ 49352698 (-) True AMCG00013997
AMCG00014002 mRNA downstream 122172 49327442 ~ 49330861 (-) True AMCG00014002
AMCG00013999 mRNA downstream 126891 49320171 ~ 49326142 (-) True AMCG00013999
AMCG00013998 mRNA downstream 135604 49312310 ~ 49317429 (-) True AMCG00013998
AMCG00014007 mRNA upstream 2755 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014008 mRNA upstream 10567 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014006 mRNA upstream 28170 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014011 mRNA upstream 51594 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014012 mRNA upstream 103932 49557804 ~ 49558760 (-) True AMCG00014012
TU60179 other downstream 631877 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 631877 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 631877 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1478118 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 1584170 47864850 ~ 47868863 (-) True AMCG00013946
TU60423 other upstream 30628 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 40855 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 265893 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 274632 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 291074 49744946 ~ 49747551 (-) True G48516

Expression Profile