RNA id: TU60462


Basic Information

Item Value
RNA id TU60462
length 3813
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G48398
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49537728 ~ 49595073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGACCGTTCCATAACCAAAGTTTAATTCAGAGAACATTACAAATCTTACAAACAgccaaaacaaaagtttaaaataaaaggacTAGATTGTTACAAAGATTTCTTCATTACTCACAGGACTCTTCAGACACCCTTCCCAAGCTCTCGAAAGGCctttatacacaaacatacagggGGGCGAAAATAAACTTGATTTGCGGCACAAGATGCCAGAGAGGCCTCCCTTGGAACAGACCGGCCGGGACAGAACCAGAACTTGCCAAAACTGCCTGCACAGCCCCCGGCCCATTGAGCCACTACTCCCACCCCTGCAAGGGCAGAATTTGGATGCTTAAATGGACTGAAGCCACAGACCCACCCAGCTCAAACCCAACTGAAGAGCCCCAGccacccgccccccccaccGGCCGAGCGCAGGGCAGCACTCGGGTTCAGAACAACGCACAAACGCTTTGGAAAAGGATCAAGTTTAATTGTGCGACGGTGAGCGTGGCACTGCCGGAGGGACCCGGGCAGGACGGCCCTCTCCTGCACACAGCCACTCGTATATACAGATCTACTATACACCAACTGTTAATCTTGCATTtcacacagatttaaaaaaaaaaaaaaaaaaggggggggagGGAAATAAAGGCATAACCGCTAAAACGtagaatttatatataaaaaaaaaaaaaaaaaaatggaaaagaataGCACATCTCTACAGAGCTCATAGTCCTTAAGGGGATGCTACCAGGGGAAGGGTGGGCTTTCAGGGGTTGAACTTTCTCCACATCTCTCCTCCACTGTAGCATCACTTCACTTCCGTTCATTTGACCTGGAACggctggggagagagagagagagagagagaaatcagacTGACAGGCTGGCCTTTACCTGCTGGAGAGAAGACCAAGTCCTCATTACTCCAATTTCACCGAGATACAGGTCCACAGCCTCAAAGGTAGTTTCAGATCAGAACAAGGACAGCGACTGAAGGGACTGGATAGAGCAGTACCCCAGGGGGCCGGGGCCACGCCTACCTGCGAGATCTGGAGAAGGAACGCGAAGGCTTACGGGTCCTGTCACGGGAGAGGGACCTCTCCCTTCTTCGGTCTCTGGACAGAGATCGCTGCGGCTGCGACTGAAGCTCCTCCTGCGTGGCGATCTGGAAACGAGAAACGCAGCGTCACATTGAGGCCCATGCGCAGCCTGGCCACTGCACCAACCCCACACTGCACACTCGCCCGGGCCCCTCAACACCTGCCCCTAGCACAGCAACGATGGGGCCTCCCTGCTACGGCCCCCTAAACACCGACAAGGCGTGAGCGCGGGGGCAGTGCCACCAAGGCCTCCACTGTGCTGCTCGGGCACCACAACCCCTACATAGGGAGGGTAGGATCAATCAGAGGGACGAGGGCAATTACCGTCTCTTAACCAGGGCACTAGATGGGAACGGGGGGACTATTGCAGGGTCAGGGAATCTGTCCCATGAACTGAGCGCCCACTAGAGCACTGACCCAAAGAGCGTCTAAAAACCCCGCCCTCGCCTCTGCCACTGGGGGGGGTCGCTTATAAAGACCATGCTCTACTCAGGTCTGTCACACCACATCCAGGAGTGAACTACAAACTCCAGCTACTCAACCAGGAAGTCAACAGACAGCACCGCTTCCAGGAGACCAAGACACTGCAGGTTTAACTGCAGCCTCAGACTGAAGCAATTCAAAGCCACACTGCGAGAAGTTAAGAGGCAAATACTCTAGGGAAGCTCATTTTTTCTTCCCCGTGGGGTTTAAATTTGTCCTTCGGTTAAAAAGGTGACCTCTCCAGAACACACCAGGGCACttcaaaccccccccccccccccccccccccccccccccccccccaccccaacccaccCATCCCCAAGATAAACTCATTAAACTACTTGGTCTACATGAGACTAGGCTAACCCTGCAAGACAACGGACAATCttagtcaaattaaaaaagccAACCAttgaattttttaaaataaaaattcaataaaaaacgATAAAAGAAAAGGTCTAAAATGAAGCAGCTTACTCGTTTAAACTGTAACCAGCAGTAAACTGTATTAAGCAGGAAAAACTTACTAGTCTTTTGGTTTTCAACAAGCTAGAAATGGCGAGGGATGCCAGACTGGTGGGCAGGAGAAGGCAGAATTTGCTGAATAGGATTTGCCAGAAGTTGCGAGCTGTTTAGCTGGTTGGCGGATGGGGGCTGCTTGTggatttttcctgcttttatggCTTAGCCGAGGGCCTGTTGCTGTAGGTTGTTGTGTAGACATTTGGAAAAGTAAACAGCTGATTGGTCAGGGATGTGAGGTAGGCCGCTGCTGATTGGGTTTAGGTTGGAGAGGAGGCTGAGAGAACACAGCATGCTCAGGAACCAAAGGGCGGTGCAACCTGACGACCGGCCATGCCTGGGTCATGTGATACGACCCCAGCCAAGCTGAGTGGGGCACGCTGGTCAGTGGTCACATGACGCTGAAAGAGGGCTAGTTGACTGACTCAGAGGGTGGTGAGAAGAGGCATGATGGTGACTCTGCAACGGgggttcatttttattaatatagagatggtaaaaacaaaagtaagcaaccttcaaaaaaataaaaggctatTACAACCAAATCTAGCATCACTttttaactaaaatgtattttaaatcttcTGCAACTCAACTAGAAATAGGACTGGGCTCTCACCGGGACACTAAGCACAACTGGGCCGATGACCCAGCTGATCACCAGACCAGCGTCAAGTCGTCGGACAGCTGGACCAGGTTTGGGGTTTGGGTACATTAATCAGCTTCAAATTTGCAGCGACCGTTACATCCAGCACATCAGTTCAGAGCATCACAGAGCCCAGCCCTATTTACTGCCCTAGACTGCACCCACTTTAAACAGAGTACAGTatccgcccccccccacccgaaCCCAAGCCCTGAACCCCACCTCACCCCTCTAACAAACCTGGCTGCAATGTTAGACTAACAGATGACAATGAAGATGAGACTAGATTAAGACAGTTGGTCATCGCATGCCCCAGCGGTCAGCGCCTCAGAGAGAGGGGCCGACAACTCCCTCAACCCAAAACACTACAGGCTACCCGAGTCAATGTATTCATGGGCTTAGCTTTCGTATGAAGACAAAACAGGAAGCTGGAGGAACTAGGAATCTgaaatggaggggggggggggaataaatcTGTAAATCAGACTCAAAACTTTTCAGTAAAACTGGGTGGAGTTGACACTCTCCTAGCTGAAGTTAGTttcccccactagaggccgAAGCCCCGCTGTCTAAAGGGTTCGTACCTGCGCCGGGGCGGCGGGCTGCGGCGTCTGTAGTCGTCCCGGGGGCGGCGGCTCCAGGATGGCGGGGGCCCTCGGTTGCGGGTGCGCTTCTCCCCGTTGGACAGCTCTACACGCACGCGGCATGCGCACAGATTCCTGTGGGGGCGCGTTTCACTCATTACACCACAAAATAAGCCCAGAGAACTATCGGGAGCAAACAATTACAGAGGGAGAGTTTTGGGCTGACGAAAGAGGCCTCACCTCCCGTCCAGCTCCCTGACGGCGTCAGCGGCATCGCGGGGGTCCTCGAACTCCACAAAGGCGAAGCCGGGTGGGTTGCGGGCGACCCACACGCTGCGCAGGGGCCCGTAGTAGCCGAAGGCGCGCTCCAGCTCAGTCTTGTTGCCATTGTTGCCCAGGTTCCCGACGTAGACCTTGCAGTCGAGCGGACAGTCTCTGTGCATGGCGGGGTCTGCAAGAGATGCCGGGTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60417 lncRNA downstream 87487 49453033 ~ 49453872 (-) True G48370
TU60404 lncRNA downstream 186824 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 490927 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 890130 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 995084 48545237 ~ 48546275 (-) True G48106
TU60502 lncRNA upstream 68418 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 72999 49618277 ~ 49618955 (-) True G48433
TU60512 lncRNA upstream 76819 49622097 ~ 49623191 (-) True G48437
TU60514 lncRNA upstream 78532 49623810 ~ 49627767 (-) True G48439
TU60588 lncRNA upstream 117814 49663092 ~ 49675750 (-) True G48494
AMCG00014011 mRNA downstream 18739 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014006 mRNA downstream 54917 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 71227 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014007 mRNA downstream 78189 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014001 mRNA downstream 155708 49354962 ~ 49385651 (-) True AMCG00014001
AMCG00014012 mRNA upstream 12526 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014023 mRNA upstream 50505 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014024 mRNA upstream 133042 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014034 mRNA upstream 144401 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014035 mRNA upstream 152583 49697861 ~ 49703373 (-) True AMCG00014035
TU60452 other downstream 42729 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 56592 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 720203 48817983 ~ 48821156 (-) False AMCG00013991
TU60601 other upstream 174487 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 183226 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 199668 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 319046 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 325715 49870993 ~ 49873375 (-) False G48570

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064922 True 2103 lncRNA 0.39 2 NC_007117.7 41080510 ~ 41082985 (+)
rainbow trout (Oncorhynchus mykiss) TU715241 True 3297 TUCP 0.44 6 NC_048571.1 58708295 ~ 58713574 (-)