RNA id: TU60464


Basic Information

Item Value
RNA id TU60464
length 1763
lncRNA type sense_over
GC content 0.52
exon number 3
gene id G48398
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49537728 ~ 49595073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCAATCACCTACCTGGCCCGTGCACAAAGCCCCGCCCTGCCCGCACTGGTGAGGCTCGTGAGCCCCTTGTCACAGTGAGAGCCACCCCCACCGTCACTGGCCAGCCGTCAGCGGATGAGCCGGAGCGACCCCACCCTGCAGGTCAAATCAAATCACAAGGAGAAGAACTCATATTTGTGATTAGATATCAATCTCTTTAATGTGGAACAGTTTTAAAGCAGAATGGACGCTAGCGTGACAGCTGTACAGATTCACAAGTTTCGCTCATTTGCTGCAGAACTACAATAAATAGATTTACTTCCACCAGTCTTAAACCCCCCCAACACCGCATAGTCTGCTCTGAGGCTGTGACCCTCCCAGGATCAGGTCTGTGCTGACCTGCCCTTCCCTGTCCCCTGGGGTCTGGTCTTGGTTCTACATGGAGCCCAGAGAGTTCTGGTTCTGTACCGGCCGGGACAGAACCAGAACTTGCCAAAACTGCCTGCACAGCCCCCGGCCCATTGAGCCACTACTCCCACCCCTGCAAGGGCAGAATTTGGATGCTTAAATGGACTGAAGCCACAGACCCACCCAGCTCAAACCCAACTGAAGAGCCCCAGccacccgccccccccaccGGCCGAGCGCAGGGCAGCACTCGGGTTCAGAACAACGCACAAACGCTTTGGAAAAGGATCAAGTTTAATTGTGCGACGGTGAGCGTGGCACTGCCGGAGGGACCCGGGCAGGACGGCCCTCTCCTGCACACAGCCACTCGTATATACAGATCTACTATACACCAACTGTTAATCTTGCATTtcacacagatttaaaaaaaaaaaaaaaaaaggggggggagGGAAATAAAGGCATAACCGCTAAAACGtagaatttatatataaaaaaaaaaaaaaaaaaatggaaaagaataGCACATCTCTACAGAGCTCATAGTCCTTAAGGGGATGCTACCAGGGGAAGGGTGGGCTTTCAGGGGTTGAACTTTCTCCACATCTCTCCTCCACTGTAGCATCACTTCACTTCCGTTCATTTGACCTGGAACggctggggagagagagagagagagagagagagacagagagatagagaggggtTGTAGTCGTGGATTAACAGCGACTTAAAACAAAGCTTTTAGTGGCGACCTCGCATGCAGCGGATAAAAGATGGCCGCCACGATCCTACAACAATGCGCcagccgcctcctcctcctcctacacCGGGCCACCGAACTGCCGCTTTAATCGGAGAATAACACCGGCGAGACCCTGCACTGTGCTGGGGAAGACTCCCCGGCCGGCCCGCCGATCGAAGCGCGCTGTGTGGAGTTAGAAAAGCGCCGTTTCTTACCGATGTCGTTGAAGACGTGTGCTCCGCTGCGCGCTGCTCTGCCTCCCGCTCGTCTGCGCTGCTCTACTCACGGGAAGCACGAAATGGCGGCCGGCCGGAAATCCGCTTTTATGCGGTGCATTGCGTCATCGCGCTACGTCCTGCACGTACGCGTGTAGTTTCTTGGTGGTTGTTGCCACGCTTCATTGATTAATTGGGGAAACTGGTCTGGTTGCTTTATAGAGCTGGGCGAGAAATAAATTGACGTTAATTCTAAGATACAGCACAGAGGTTATTAAAGCTCTCTTCCACATGTAATGGTAAACATTGGAGGCCACTTCTGTACTTGCAGTAgccttttctgtactttaaaatcaaactaattACATGGTGTATGATTAGGTTACTTGATTGTTGCCCTGAAGACACAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60417 lncRNA downstream 83856 49453033 ~ 49453872 (-) True G48370
TU60404 lncRNA downstream 183193 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 487296 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 886499 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 991453 48545237 ~ 48546275 (-) True G48106
TU60502 lncRNA upstream 18623 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 23204 49618277 ~ 49618955 (-) True G48433
TU60512 lncRNA upstream 27024 49622097 ~ 49623191 (-) True G48437
TU60514 lncRNA upstream 28737 49623810 ~ 49627767 (-) True G48439
TU60588 lncRNA upstream 68019 49663092 ~ 49675750 (-) True G48494
AMCG00014011 mRNA downstream 15108 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014006 mRNA downstream 51286 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 67596 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014007 mRNA downstream 74558 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014001 mRNA downstream 152077 49354962 ~ 49385651 (-) True AMCG00014001
AMCG00014023 mRNA upstream 710 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014024 mRNA upstream 83247 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014034 mRNA upstream 94606 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014035 mRNA upstream 102788 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014033 mRNA upstream 128002 49723075 ~ 49724237 (-) True AMCG00014033
TU60452 other downstream 39098 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 52961 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 716572 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 716572 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 716572 48817983 ~ 48821156 (-) True AMCG00013991
TU60601 other upstream 124692 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 133431 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 149873 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 269251 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 275920 49870993 ~ 49873375 (-) False G48570

Expression Profile