RNA id: TU60514


Basic Information

Item Value
RNA id TU60514
length 1218
lncRNA type inter_gene
GC content 0.58
exon number 4
gene id G48439
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49623810 ~ 49627767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcacgtgcacacgcacacactcaggCAGGAGCGGCTCGTGTCTGTTGGAACTGTTTATTTATGCTGCTACACTGAACATCCGACACAAAGAGAAGCAGAGACAAGATTTGATTCCCCAACACCCAGGAACACCCGgacagacggacggacagacggacaggcGGACAGACAGGTAGGTCCTGGAATCAATGTGCGTGTGTCTAGGAGTCGTTGACGGACATGTTCTCCACTTGGTTCTGGAGGCCCGGGTCCACCAAGCCCTGCTGTTTCTTCTTGCCTCCATCCTGCTGCTTCTTCTGCTTCTTGGACAGCTCCTGATCGATGGGCGCCGGCTTCACGAACCGGATCATCTCTGTCAGGCCTGGGCATGAAGCAGCGCAGTTTCTCGGGGATGCGCAGGCGCCGAGCCTGGTAGTCGGTGCAGTTGGAGCAGGAGACGAGCTCACGAAACGCCCCCGACCCGGGGAACCAGGCCTCCAGGTCCAGCTTCTTACTGGCAGCGTGGTTCAGAGAGCCTGCGCACACAactgatacactgatacacacaatGCTatacaacacactgacacagcaacACATTactatacaacacaacacactgatacacacagcAACACTACACACTGATACGCACTATTACACACTACAACACTTCACACAGATGCACACCACTGATACACACAGATAAAGCAACACAGcaggcaggcaggcaggcaggcaggcaggcccACCTGAGACGATGTTGACGATGCGGTAGGGGATGCCCAGCGACTGGTAGAACTCCTCCGCTGTGCCGATCATCTCGTCCATCATCTCCCAGGACTTGTTGTCGTGCGGAGAGGCGTAAACAAACTGCTCGATCTGATCAACACAACCAACCAATCAGACACAGCCAGGCCAATCGGGAAGGCAGTCAACGCCACTTCCACTGAGAGGAGGGGCTACAGTGAGAGATCAGCCGTGGAAGGAGGAgaacagtcacacagacgcacCTTCTCGAACTGGTGCACCCTGAAGATTCCGCGCGTGTCGCGCCCGTGGGAGCCCACCTCCTGGCGGAAGCAGGTGGACAGGCCGGCGTAGCGCAGGGGCAGGTCCTCGGGCCGCAGCCACTCATCCCGCAGGAAGGCGGCGATCGGCTGCTCCGACGTGGCGATCAGGTACTTCTCGTCCACAGTGGCGTCCTCGGCCCGCTCGCTGCCCTTCCCGATCACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60512 lncRNA downstream 619 49622097 ~ 49623191 (-) True G48437
TU60506 lncRNA downstream 4855 49618277 ~ 49618955 (-) True G48433
TU60502 lncRNA downstream 9836 49613696 ~ 49613974 (-) True G48430
TU60464 lncRNA downstream 28737 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA downstream 78532 49541359 ~ 49545278 (-) True G48398
TU60588 lncRNA upstream 35325 49663092 ~ 49675750 (-) True G48494
TU60602 lncRNA upstream 93979 49721746 ~ 49723854 (-) False AMCG00014033
TU60603 lncRNA upstream 97968 49725735 ~ 49726249 (-) True G48508
TU60604 lncRNA upstream 98521 49726288 ~ 49727007 (-) True G48509
TU60607 lncRNA upstream 106142 49733909 ~ 49734172 (-) True G48512
AMCG00014023 mRNA downstream 16616 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014012 mRNA downstream 65050 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014011 mRNA downstream 101190 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014006 mRNA downstream 137368 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 153678 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014024 mRNA upstream 50553 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014034 mRNA upstream 61912 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014035 mRNA upstream 70094 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014033 mRNA upstream 95308 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014036 mRNA upstream 122701 49750468 ~ 49757241 (-) True AMCG00014036
TU60452 other downstream 125180 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 139043 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 802654 48817983 ~ 48821156 (-) False AMCG00013991
TU60601 other upstream 91998 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 100737 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 117179 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 236557 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 243226 49870993 ~ 49873375 (-) False G48570

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU950014 True 2796 lncRNA 0.46 11 NC_048573.1 69005446 ~ 69012198 (+)