RNA id: TU60526


Basic Information

Item Value
RNA id TU60526
length 380
lncRNA type inter_gene
GC content 0.73
exon number 1
gene id G48449
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49679497 ~ 49679876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCTGTGGCCTTGCCTGTGGCCCCGCTGCGGGGCGGAGACTGACCGCTCGGGGGGGCAGCGGGGCAGGAGGGCCCCTCGGCCATGGGTGCTGGGGAGATGGAGGGCAGCAGGTCCTTCACCGGACTGTCTCTCACCACATAGGTCTCCCGGCGCGGGCAGCGTGGCTCCGCCCCCCCGCCGTTCTCTTTGCGCGCGCCGCGACGCAGTTGCCGGGCCAGACGGTTCGCCTCCAGGGATATCTGCTCCAGCCGCTCTGCGCTCAGGGGGCTCCAGCTCGGCGCCCCGGCCCCCCTGGCCCCCTGCAGAAGCTCCGCCTCTGGGACGTTGAGGTCCAGAGTCTTCGCCACACAGCGCCCGGCGAGCCGCACTGGCCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 194538 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 222799 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 225625 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 567414 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA upstream 583951 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 49795 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 66639 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 73708 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 113330 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 128272 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014018 mRNA upstream 5746 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 26335 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014025 mRNA upstream 45630 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014017 mRNA upstream 51732 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014021 mRNA upstream 59470 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014014 mRNA downstream 645 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014019 mRNA downstream 6932 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014027 mRNA downstream 15390 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014026 mRNA downstream 23835 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 26985 49706861 ~ 49716881 (+) False AMCG00014032
TU60500 other upstream 62257 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 134162 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 134162 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 134162 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 134162 49538054 ~ 49545335 (+) False AMCG00014010
TU60533 other downstream 9796 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 18744 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 21375 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 23202 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 26967 49706843 ~ 49717428 (+) True AMCG00014032

Expression Profile