RNA id: TU60533


Basic Information

Item Value
RNA id TU60533
length 2602
RNA type TUCP
GC content 0.54
exon number 2
gene id G48451
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49689672 ~ 49692361 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcttctttcttttcttatctaatttacaaaaaatatgacaTATTTTCAATCAGGAATAAACAAAAGTCaaccagaaatatatatttatatacatttacacatatttcaagggatggattaaaaaaaaaaaaaaaaaaacatactttcacTTTTGGCCAGAGACACAAACTGCCCGGCGCCTTGGAGCGCAGCGGCCCGTCACAGGTGATGTCACAGGATTCACCCAGCGACTCAGGCAGGAAACCAGTGCAGAGCAGGAGTCGGAGCCAGTCACTGGGAGCGGTGGTCTCCTCCAGGGAGAGGACGGGGCTGTGCGGGGGGAGATCACCGGGCCCCGGTGCCCCTCCCAGGAGACGAGCGGGGAGGAGACCCTGCTGGTCTGAAGACGAGGGGCATCACGGCACGGCCGCACGCCTGGAGACCACAgcatcaTTTCTTCCTGCGCACTTTGGGCTTCTTGACAGGCCGCAGGTATGGGTTGTCGATGAGGTTCTCCTCACTGGCCTTGCCCTGCGGCAGGGTGCCCCCCTGTGGCAGCATGGCGTTCTCCTTGTCGGCACCTGGCTCGTCCTGCGGCGAGAGACACGAGTGAGCGGGAGACAAGAACAGTGCTGGGGAGCATTGTGTGATCGATTGTTCCAGACACAGGGCAGGGCCCGGCCGGGCAGTATCGCTTTTCCCTGTAACACTGAGGTGTGTGGAGAGTGAGGGGCCATGGGGGCGGGGTTCTCACGTTGCCAATGCCCCCAGGCGTGTTCTCGGTGTCGGTCTGGTCGTCCTGCTCCGAGGAGTCCGtctcctccagctgctgcagctccagctctgACGGCAGCAGGGCGCTCAGGTAGGGGATGGAGCTGGGCCTCGCTGCGATCACTGCACACAGAGAAGGGGTTACTGCACTCTACTGCACACAGAGAAGGGGGAGGGAGACCAAGGGTTCTTGCACTGCACAGCaagtgatggagagagagagagagagagagagagagagacacagagggagggagtgggggaaGAGAGAGGTAGCTGCTGTGTGGAAGAGAAGAGAGTGGGGGGCTCTCACGGGGGAAGGCGGTGATGTCATCCTTGAACAGGCTCTGTGTCTCTCCGGTCTTGGCCATGAAGCGTGTCAGAGCGCGCTCCACATCCCGCCGCTGCGTCGCCGCTTTCTCACGCACCACCTGGTACTCCGACACCGGCTCCCGGAACGTCTGCAGGGCACGGCACAGCGCTCACACACACGGCACAGTGCTCACACACACGGCACATCATGCGGCACAGagctcacacacagacacagattgtGGCGTGTGTGAgctctgtgtgtatttctgttttcacaATCTCATTTGTACAACAAACTCAGCACAACAAAGATGGTCTACAATCACCAACACATCCAGACCCTGACTGAAAGTAAGCGTTGAGTTGCAGAGTTTCTACCTCCTCTGTCGTGTTCAGCTTTAACAGTATGATGATCAGCACTGACTGTTTTCAGTTCGAACAACACAcccgttttcttttctttgtctcGTCTCCTCTCCTCATTGGCGAGAGGAGTTCTTGCAAGCGACTAATCCTATATTTTTCTCCCGCTCTCCTTGTTGGGACGGTGTTAGGAATCTCACATTGTGTCTGTTAATGTTGAGCTACATTATGTTGTGATGTACAAATAAggctatattttcaaatgcaaccCATTGACTCAAATACAAATGACTGAAAATGGAGAATCTCAAATACTAGTGTAAACATAATTGATGTTTTTGCAAATTCTTATCAATACTAAATACAGTCAATGAGTGACTGTCAAACAGGAAACAATTTGCaacttttcaaatacaaaattgaaacaGTATTTGATGTCAAATTTGTCATGGTATCTGACCCAGGTCTGACGCACACTgcctcacacactcacacgcatgcacgcacgcacacgctgCCTCACACGCGCACACTGACATGCTGCctcacacgcgcgcacacacacacacgctgccTCACACGCACCCCAGCCTTAACCCACCTTTATGCCCTCGGCAATACTCATGCAAACCAGACCCCAAGTGTCACCTCTTACCCCTCTACCCTGCTGTACACTGGGGCCCCTCTCTTACCCCTCTACACTGTGCAGCAGTAAGTCTGTTGAGAGTCACTCTGGGAAGGAAGGCATCGGCTtcacaaacatgagtgaagctcgtcacatgcagacagtttccattttttttttctctctctctctccctctcccttcctaAAACAAGAGCTTCTCctcctctcgctctccctctctgctctcCCTCTTGGGCCCCTCCCCCAGTGTCTCACCGGTGTCTTGATGTAGGTGTGGGGGTCGGGGAAGTCGGGGAAGTGGCTGGGGATGTGATGGGGGTGCGTGCGCTTCTGCCCAGCCGTCAGCGCCCTGGGCACCACAGGGGGGTTGGTCACCGGCGCTGCGGAGACAGAGTCACAGCATCAGGACCCCTGGGATGAGCCAGCCCGGCCCCCTGACAGCAGACTTTGCATCAAACTACTAAATAGGTACAGCTTTGGACCGGCCGGCGGCCCAGGACAGAGTCAATAAACAATATGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 9796 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 204713 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 232974 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 235800 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 577589 49068105 ~ 49112083 (+) True G48243
TU60545 lncRNA downstream 37310 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 54154 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 61223 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 100845 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 115787 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014019 mRNA upstream 1015 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 7252 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 15921 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 36510 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014025 mRNA upstream 55805 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014027 mRNA downstream 2905 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014026 mRNA downstream 11350 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 14500 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 25153 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 44053 49736414 ~ 49738159 (+) True AMCG00014030
TU60500 other upstream 72432 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 144337 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 144337 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 144337 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 144337 49538054 ~ 49545335 (+) False AMCG00014010
TU60535 other downstream 6259 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 8890 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 10717 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 14482 49706843 ~ 49717428 (+) True AMCG00014032
TU60541 other downstream 30665 49723026 ~ 49723876 (+) True G48457

Expression Profile