RNA id: TU60535



Basic Information


Item Value
RNA id TU60535
length 1003
RNA type TUCP
GC content 0.49
exon number 1
gene id G48453
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49698620 ~ 49699622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGCCTGTCCCTGTTGACACTTAGTGATGCCCATCAACCTTGTCGAGTTGAGTTGAGAGGGAGGAAGCGGGTGGGGtttgccagtgtgtgtgtgtgtgtgtatgtgagagagagaatgtgtgtacatgtgtccgtgtgtgagtgtgaaagtGTTGTGTGTCGCCGGCGTGCTGACCTTTGAACCAGGCCCCGGGCTTGAACAGGGCCTTCTTCAGCGCGCTGTACAGGTGGAAGTTGAGGCGCTTGTACTCTGCGATGTCGTCTCGCACCCGCGGCAGCAGCACCAGGTTGTAGAAGCGCTGGGCCATGCGCTCCTTCAGGTTAGAGGAGAAGATCCTGCGGGACAGCAGGGGGCGACAGTGAGCCAAGAGCGttatacacacgcacacgtcACACACATATTAggggtgtacatttttttattgaaatcgCAGATCGATTGAAACGAGCGCTTGATTTCGACCATCGGATTTAAAGACGGGATCGCGATGTATAcgtcagcaaaaacaaaacgacagcaGATTCCTCAACACTAGAGCCACACAGCGGCTGTGCACCTGATAGAGCTCTCTGGATCAATACTCGCTGCAGCCACTGTGTGCTCGTGTGCAGTCTTTGTTTCAGGGCTGGCTGGCGACAGGCACCAGTGAAGATGCTGCCAGGCTGCTCGGGCAGCCCTGTTGAAGTCTGcttagatatgtgcataccgatttaaACACCAGTTCACACAGCTGATGGTGtgaagtatattttattatttgtttttccattgatGTATATGCgctcattttgaaaaaataagaaacacttCAACATGCAATGCAGAGGTAGCGTTTCTGCCCTGAACATGTTTTGTGATGTTCATatgcaaatctagaactacttACAGTCCATTAAAGTGCGTTTCATAAGCCCCGACTGCGAAGGCACTGTTAATACACGGTCAGTGTTGATTCCTGGCTGGCAGCGTTAAAATCAAAAAAGGTTTTTCATTTGGAGATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 18744 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 213661 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 241922 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 244748 49453033 ~ 49453872 (+) True G48353
TU60247 lncRNA upstream 603074 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 30049 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 46893 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 53962 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 93584 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 108526 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014027 mRNA upstream 1600 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014019 mRNA upstream 9963 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 16200 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 24869 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 45458 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014026 mRNA downstream 4089 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 7239 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 17892 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 36792 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014028 mRNA downstream 39690 49739312 ~ 49749169 (+) True AMCG00014028
TU60533 other upstream 6259 49689672 ~ 49692361 (+) True G48451
TU60500 other upstream 81380 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 153285 49538054 ~ 49545335 (+) False AMCG00014010
TU60536 other downstream 1629 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 3456 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 7221 49706843 ~ 49717428 (+) True AMCG00014032
TU60541 other downstream 23404 49723026 ~ 49723876 (+) True G48457
TU60549 other downstream 42230 49741852 ~ 49742514 (+) True G48464

Expression Profile