RNA id: TU60537


Basic Information

Item Value
RNA id TU60537
length 451
RNA type TUCP
GC content 0.66
exon number 1
gene id G48455
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49703078 ~ 49703528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGCACCGTGGTGGGGGCGCTCTTGTTCTCCGGCCCTCTCTCCAGGCCGtactccagctccagctcctcctgctgGATGCGGGCCTGCTCCAGGATCCGCCGGGACAGTCGCTCATCCACGTACTCGTCCTCGGCCTCCTGCCGCCGATCTCGGCTCTTCACCCGGCCGCTCTGGCGCACCGCGTCGCCCTGCAGGATCTGCTCGGCCAGGGCCATGGTGGCTCCTCTGTGcgcctcctctcctcctcctcctcctcctcttcctcctcctctcaacCTCTTCACTTTGGGCATGTGTGCCGCTTTTGGTGACCCGTCTGTCGTGTCTGTGCTCGGTTCTATGCAGCGGACCTGCCGGCTCTATCCGCACACGGGTCTGGACTCGATCACACACGTGTGTCCTGCGTGCTGCCCCGCACTGTCATGGCGGCAGGGTGCCCCGCACAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 23202 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 218119 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 246380 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 249206 49453033 ~ 49453872 (+) True G48353
TU60247 lncRNA upstream 607532 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 26143 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 42987 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 50056 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 89678 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 104620 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014027 mRNA upstream 6058 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014019 mRNA upstream 14421 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 20658 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 29327 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 49916 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014026 mRNA downstream 183 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 3333 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 13986 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 32886 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014028 mRNA downstream 35784 49739312 ~ 49749169 (+) True AMCG00014028
TU60536 other upstream 1135 49701251 ~ 49701943 (+) True G48454
TU60535 other upstream 3456 49698620 ~ 49699622 (+) True G48453
TU60533 other upstream 10717 49689672 ~ 49692361 (+) True G48451
TU60500 other upstream 85838 49613701 ~ 49617240 (+) True AMCG00014021
TU60437 other upstream 157743 49538054 ~ 49545335 (+) True AMCG00014010
TU60542 other downstream 3315 49706843 ~ 49717428 (+) True AMCG00014032
TU60541 other downstream 19498 49723026 ~ 49723876 (+) True G48457
TU60549 other downstream 38324 49741852 ~ 49742514 (+) True G48464
TU60679 other downstream 210401 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 233287 49936815 ~ 49948082 (+) True G48578

Expression Profile