RNA id: TU60601


Basic Information

Item Value
RNA id TU60601
length 1740
RNA type TUCP
GC content 0.55
exon number 2
gene id G48506
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49719765 ~ 49721526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGAGCCACCAACCCCTCACCTGCTCTTCCAGGCTTTACATTTGCAAGGTGACAAAACAAGGAAGATAAGCAGAGTGAGACCTAGTAACAACAGGCCAGAGATCCATTAGAAAACAATGTTGATTCTCAGAgttacacccccccacccctttaaccattttaaaaaaacaatcaaaacagaaGTCTCTATATTACAAGGCTCCAGACACAGACAGGATCAGAGTGAGACTCACCCCCTGGTCAGGGACAGGGCCCTGCCGCATTGGCTGGGGCTTGAGGGACACACAGGGCCCTGTTCATGGAGCTGCCCTCACCCCAATACAGCACATTGCTCTGTgggacagcagtgtgtgtgtgtgtagaggggAGGGGTCCCGGTCAGTCTATTCCAATACTGCAGTCGAGAGAAGAGTTTCTATGAACTCATTTTACACATGATCGGGTCATGAAAATATAACCAGGAGACACGGCTGTCTGGGGAATTTCCCAGACTGCATTAGTCCACACCGGCCTCAGTTGCCTTACTGCCCCTCTCAGTCAGAGTCACGGTGTCACATGGGTGGACGGGCGAGAGGACCCAGGGTGCTGCAACACGATTGGTCTGTTGGCAGGAGCCGTTTTCCTCCAGGAGAGGGCACGAGTGAGACAATAAGAAAAGGCACCAAGTAAGATCTCTCTCTCGTCTGCCCACCATCCAGGGAGGTCTGAGCAGAGTGCTTTGGGCCTTCAGAGAGCAGGGGAGTAAAACAGTACTTATTGGGGCCCAGCAGGTCACTGACACCCAGTGGGGTTAATGCTACCAATTAAAACAGCTTTAGGTTTCCTTCCATACTGATTGAACATTCTCTGCCCAGGACAGAGCAGTGAAGTTGTCAGGCTGCACAGAGCTTTAGGGGCTGGCTGGTCACCAGGGCTCCAGGCCCCCCACAGCGTCTCGGAGCCACCCCTGACTGGACACGGGCTGAACCACTGCAGGCCAGCGCAGGGGGTATTAAGACAGGGTTATGACCTTGTGCCGGGTGCTGCAGCGCAGGGCGTGTATAGAGCTCTCTGGCCTCAACAAAACAGTCATCAGGACGTGTTCGAGAGGACAAACTAATACAGAGGGTAAATGAATGAGAGTGTGACGGAGGGTTTCAGTGCTAGGACAGACAGCTGCGCACAGCCGAgagtcggggggggggggcagcgcCGAGCGTGAGAGCGGAGGTCTGGAGCAACTGGGAGAGCAGCACAGGACGGGGGCTGTAGCAGCCTGGCCTTCAGCACTCTGCTGGTTTGGTTTTGTGTCGGTGTTGGATGAGGCTCCATTTTAACCTCCGTCCAGACAGCATCAACATGCCCCGTAAACACCACGCCCCAGAGgaaaacagcacagcagagtAGAGAACACAGTAGAAATGTGTCACGTTCCTGAATCATACGTCTGTCACAGTGCCTCGCGTGAACACCTAACCCACACCCTTCCCCCAAAACCCCCAGAGTGCCTCCCAGCACCCCCCACCGTGTCAGTCAGCTCCTGTGGCTCCTGTGCAGCCACTTCCCTGCCCTGCAGAGACGGCAGtcactgggctgggctgggctgttgGGTGCTGGTCAGGCCACGCTGGCCTCCGCAGATCGCTGAGTGTAGAACAGTATGTAGGCCTGAGTGTTGCACACCTCCTCCACGCTGCAGACGTTCATCTTGGAGTCGTTACAGTGAACCCAGAAACCTGGGGATGAGACGGCAAGATCAG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60588 lncRNA downstream 44015 49663092 ~ 49675750 (-) True G48494
TU60514 lncRNA downstream 91998 49623810 ~ 49627767 (-) True G48439
TU60512 lncRNA downstream 96574 49622097 ~ 49623191 (-) True G48437
TU60506 lncRNA downstream 100810 49618277 ~ 49618955 (-) True G48433
TU60502 lncRNA downstream 105791 49613696 ~ 49613974 (-) True G48430
TU60602 lncRNA upstream 220 49721746 ~ 49723854 (-) False AMCG00014033
TU60603 lncRNA upstream 4209 49725735 ~ 49726249 (-) True G48508
TU60604 lncRNA upstream 4762 49726288 ~ 49727007 (-) True G48509
TU60607 lncRNA upstream 12383 49733909 ~ 49734172 (-) True G48512
TU60612 lncRNA upstream 23420 49744946 ~ 49747551 (-) False G48516
AMCG00014035 mRNA downstream 16392 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 25601 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 39403 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014023 mRNA downstream 112571 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014012 mRNA downstream 161005 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014033 mRNA upstream 1549 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014036 mRNA upstream 28942 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 61746 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014048 mRNA upstream 69817 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 75320 49796846 ~ 49804601 (-) True AMCG00014047
TU60452 other downstream 221135 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 234998 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 898609 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 898609 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 898609 48817983 ~ 48821156 (-) True AMCG00013991
TU60605 other upstream 6978 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 23420 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 142798 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 149467 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 149467 49870993 ~ 49918397 (-) True G48570

Expression Profile