RNA id: TU60603


Basic Information

Item Value
RNA id TU60603
length 515
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G48508
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49725735 ~ 49726249 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGAGCCTCTGCTATTCTAAAGTGGTTTTGTATATACAACTATACTTCAGAGATCCACAGGGGGACACAGACGGACACAGACAGCCTCACCCCGCCGTCCTCCTCGCTGTCGCTGCCGGAGTCGGTCCAGGTGTCCCGCGCGGCTCTGCGTCTGGCCTCGGGGACGCTGGGGGGCGCGGAGTAGGGGGGTTCGCAGGCATCGTCGTAGTCACTCAGAAACTCCGTCTCCTCCACTTTCACCTGCGAGTGTCAGAAGCAGACAACAGGAGAGCGatatatactgtaaaacttCAAATAACTTAACTCCAATTAACTGCGGCGTCAACTGGAGGCTATTATATTAAACACTCATAAATAGAGAGACACCGCGGATTCATGCAGGGTAAGaggagcctggaaacattgcttcattgtagaagtaggctaataggccaggctttaatttattatttttgtcattattttttaattgctttccaagattcaaacaaatcacattcaatgtgtAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60602 lncRNA downstream 1881 49721746 ~ 49723854 (-) False AMCG00014033
TU60588 lncRNA downstream 49985 49663092 ~ 49675750 (-) True G48494
TU60514 lncRNA downstream 97968 49623810 ~ 49627767 (-) True G48439
TU60512 lncRNA downstream 102544 49622097 ~ 49623191 (-) True G48437
TU60506 lncRNA downstream 106780 49618277 ~ 49618955 (-) True G48433
TU60604 lncRNA upstream 39 49726288 ~ 49727007 (-) True G48509
TU60607 lncRNA upstream 7660 49733909 ~ 49734172 (-) True G48512
TU60612 lncRNA upstream 18697 49744946 ~ 49747551 (-) False G48516
TU60616 lncRNA upstream 22340 49748589 ~ 49749282 (-) True G48517
AMCG00014033 mRNA downstream 1498 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 22362 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 31571 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 45373 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014023 mRNA downstream 118541 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014036 mRNA upstream 24219 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 57023 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014048 mRNA upstream 65094 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 70597 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 87800 49814049 ~ 49818276 (-) True AMCG00014045
TU60601 other downstream 4209 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 227105 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 240968 49484500 ~ 49484767 (-) True G48373
TU60180 other downstream 904579 48817983 ~ 48821156 (-) False AMCG00013991
TU60605 other upstream 2255 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 18697 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 138075 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 144744 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 144744 49870993 ~ 49918397 (-) True G48570

Expression Profile