RNA id: TU60604


Basic Information

Item Value
RNA id TU60604
length 720
lncRNA type inter_gene
GC content 0.69
exon number 1
gene id G48509
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49726288 ~ 49727007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGAGTAGGGCGTCTGTGCGGCTGCGCTCCAGTCCGGGCCGGCGCTGGTGTCCTGGAACACAGACAGGATCCCGTTCAAACACAGGGCAAACAGGATcttcacgtgtgtgtgtataaatacatacgtgtgtgcgtctctctgtgtgacTCACCCACTTCCTGTCGGGCGCGGGGGGGCTGGCGGGGCTGCCCTGCAGGGGGCTGGCCGAGGCGGAGGAGGTGGGACTTGACAGGGAGCTGGGGCTGGGGAACAGCGGGGGCGCGGTGGGGGGCGCATCCTCACCAGAGTCCTGCAGCAGAGACTCAGCCCGGTCCACCAGCCGGGAGAACGTCTTCACTGCCTTGGGCAGCactgcagagagggagagagagagtgagagtcgGCCCTCGGGTCCCCATGCCCGTGCCCCCCGCACCCCCCGGCCCCGACGCTCACCACGGCACAGTGTGAGGGACTGGCGCAGGCGGCGCGTCTCGCGGGCGGAGCGGGCCAGCTTGGCGCGCAGGACCTTGATCTCGGCAATGAGGTCATCCTTGGAGCGCCGGAACAGCgcagcctcctcctcctcccagtcGCTGTCGCCGCGCGGCGCACACTCCGGCCCTGCCGCCGGCTCGCCCTGCTCCCGCTGCAGGGACAGCTCCAGCTGGGACAGGATGTTGAGGGAGGGGGCGGCGTCCAGGTCTGGGGGGTTGAGGGCCGGCCTCTTCATCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60603 lncRNA downstream 39 49725735 ~ 49726249 (-) True G48508
TU60602 lncRNA downstream 2434 49721746 ~ 49723854 (-) False AMCG00014033
TU60588 lncRNA downstream 50538 49663092 ~ 49675750 (-) True G48494
TU60514 lncRNA downstream 98521 49623810 ~ 49627767 (-) True G48439
TU60512 lncRNA downstream 103097 49622097 ~ 49623191 (-) True G48437
TU60607 lncRNA upstream 6902 49733909 ~ 49734172 (-) True G48512
TU60612 lncRNA upstream 17939 49744946 ~ 49747551 (-) False G48516
TU60616 lncRNA upstream 21582 49748589 ~ 49749282 (-) True G48517
AMCG00014033 mRNA downstream 2051 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 22915 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 32124 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 45926 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014023 mRNA downstream 119094 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014036 mRNA upstream 23461 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 56265 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014048 mRNA upstream 64336 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 69839 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 87042 49814049 ~ 49818276 (-) True AMCG00014045
TU60601 other downstream 4762 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 227658 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 241521 49484500 ~ 49484767 (-) True G48373
TU60180 other downstream 905132 48817983 ~ 48821156 (-) False AMCG00013991
TU60605 other upstream 1497 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 17939 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 137317 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 143986 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 143986 49870993 ~ 49918397 (-) True G48570

Expression Profile