RNA id: TU60616


Basic Information

Item Value
RNA id TU60616
length 562
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G48517
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49748589 ~ 49749282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCACGCACACTCAAAAGACACAACTCTTACGTATGTGACAGACCAAACTGAAATGCGAAGTCTGAAAAGATTTTATTCatatgaaaagtatttaaaaaaaaataggaaaccCCAAAAATATAATAGTAGAGGCTATAGAGAGACGAGCAGACGAGGAATGGTgagtgtctgcgtgtgtgttttcattctcGTCCCCCCAGCGCCTCCCCTCGCCCTCGCTACTCCTCCTTGTCGTCCTCATCGTTGTCCCTGCAGATGCAGTAGTTGAGGCTGGTGGCCAGACACAGCCACAGCAGGTAGGGCACCATGAGCAGGGCGGCCGCACGGTTCACTGGGTACCAGGTCACCAGCGTGGCGCCCACTGTGCCCGTCAGCAGCACCAGCTCCGCCAGGCCAGCTTTATCTTGTGAGCTCCGAAGAAGATGGGCGTCCAGGCCCAGTTGAGCGCCAGCTGTGTGGCGTACAGCCCCAGCGGCAGCTTGGCCTCCTCGGTGAAGCCCCCCAGTTCTCGCCACACCAGGTATGAGCCGTACCTGAGGGGGGCATGAGAGTGGCTAG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60612 lncRNA downstream 1038 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 14417 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 21582 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 22340 49725735 ~ 49726249 (-) True G48508
TU60602 lncRNA downstream 24735 49721746 ~ 49723854 (-) False AMCG00014033
AMCG00014033 mRNA downstream 24352 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 45216 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 54425 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 68227 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014023 mRNA downstream 141395 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014036 mRNA upstream 1186 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 33990 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014048 mRNA upstream 42061 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 47564 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 64767 49814049 ~ 49818276 (-) True AMCG00014045
TU60614 other downstream 1038 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 19534 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 27063 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 249959 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 263822 49484500 ~ 49484767 (-) True G48373
TU60684 other upstream 115042 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 121711 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 121711 49870993 ~ 49918397 (-) True G48570

Expression Profile